Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00525 ATGAAGGAAGCTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCTTGTGCCGGTGGCATGGTTCAGATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCATGCCGAGCATGCACAAACTAACGTTGATCTGGGAGCTCCCCTGAGGGTTCCTTCCTTCATCCTCTGCCGCGTGGCGCAGGTGAAATTCCTTGCTGACCCTGAAACCGATGAAGTCTTTACAAGGATGAGCTTGGTTCCCCTGAGGAATTCAGAGCTTGATTCTGATGATGGCGGTGTCCTTGATGCCAATGCTTTGGAGAATTCAGAAAAGCCTGCTTCTTTTGCAAAGACCTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGTGCAGAAACAATCTTCCCCCGACTCGATTACTCCGCAGAGCCGCCGGTTCAGACCGTGATCGCCAAGGATGTTCATGGTGAAGTTTGGAAGTTCAGGCACATATATAGGGGCACACCGAGGAGGCACTTGCTCACAACAGGGTGGAGCAGTTTTGTCAACCAGAAGAAACTGGTTGCAGGGGATTCAATTGTGTTCCTGAGGGCCGAAAATGGTGATCTCTGTGTTGGGATTAGGCGTGCCAAGAGGGGAACAGGTGGAGGATCGGAGGCGCCATCGGGATGGAGCTCCGGGAATGGAAGTTGTGGCCTTGGCTCTTATGGAGCATTCTCTGCCTTCTTGAGAGAGGAGACCAAGCTGTTGAGGAATGGTTGTGGGAATTCGAGTCCCGGTGGTGGCGGCAGTGGTTTGAATGGAAAAGCTAAAGTAAGTCCTGAATCTGTGAGGGAGGCTATAACACTGGCTGCTAGCAATCAGCCATTTGAAGTTGTTTATTATCCAAGGGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGGCTGTGAGGGCAGCAATGAGGATACAATGGAGCACTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAGCATGCCAGCCATCAATCTATCGCCCTTCTCTCCGCCAAGGAAGAAACTCCGGTTTCCACAACACCCCGACTTCCCCCTCGACGTTCAATTTCCTATACCGTCGTTTTCAGGCAACCCCCTAGGGCCTCATAGCAGCCCCTTGTGTTGTCCATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATCTCTACCTTAACAACAAACTGCAGTTGGGGGTGATTCCGGCCGCGAATGTTCAGCGACTGGATTTGCATTCGGGGTTTCCCAGTGGCGGCAACTTCACTGGCCATGACAAGAGTAAAGAAAGCTTGTCATGCTTGCTAACCATGGGAAATTCTCACAATAAGAGTTTGGAGAAGTCTGATAATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCCAGAAGGCCTTCTTCTTCTGGTGGTGATGATGATGTGTTGCCTCAGAATGGTACCAAGAAAACTTCAATAGATGAGAATGAGAACAAAGACAAAGACAAAGAGAAGTGGTTTTTCAATGACTCTCAATCTCCTCTTTCACAACAATTTTCACCTGGTAAATCAAAATCATCTTGTAGCACAGAGTTATCTTGGCAAATTGGGTTGGATACTGGTCATTGCAAGGTGTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGACCTGTCACGTCTTAGCTCCTATGATGAACTGTATAGGAGACTCAGCAACATGTTTGGAATCGAAAGATCTGAGTTGTTGAGTCATGTACTCTACCGTGATGCAACTGGTGCTGTCAAGCAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATCCAAGCAACAAGGATGCAAGGAGGGCATGGATTACAGGTACTCGTAATGGTGAACATGGATTGGATGCATCAAACAAGACAGGTCCTCTTAGCATATTTGCTTGA 2178 0.4798 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQTNVDLGAPLRVPSFILCRVAQVKFLADPETDEVFTRMSLVPLRNSELDSDDGGVLDANALENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGTGGGSEAPSGWSSGNGSCGLGSYGAFSAFLREETKLLRNGCGNSSPGGGGSGLNGKAKVSPESVREAITLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMPAINLSPFSPPRKKLRFPQHPDFPLDVQFPIPSFSGNPLGPHSSPLCCPSDNAPAGIQGARHAQIGISLSDLYLNNKLQLGVIPAANVQRLDLHSGFPSGGNFTGHDKSKESLSCLLTMGNSHNKSLEKSDNVKRHQFLLFGQPILTEQQISRRPSSSGGDDDVLPQNGTKKTSIDENENKDKDKEKWFFNDSQSPLSQQFSPGKSKSSCSTELSWQIGLDTGHCKVFMESEDVGRTLDLSRLSSYDELYRRLSNMFGIERSELLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDPSNKDARRAWITGTRNGEHGLDASNKTGPLSIFA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00525 725 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Aip08g00525 725 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Aip08g00525 725 Gene3D - 319 393 - -
Aip08g00525 725 Gene3D - 612 696 - -
Aip08g00525 725 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip08g00525 725 SMART B3_2 111 213 IPR003340 GO:0003677
Aip08g00525 725 CDD B3_DNA 110 211 IPR003340 GO:0003677
Aip08g00525 725 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Aip08g00525 725 PANTHER AUXIN RESPONSE FACTOR 2 702 - -
Aip08g00525 725 Gene3D - 109 213 IPR015300 -
Aip08g00525 725 MobiDBLite consensus disorder prediction 540 564 - -
Aip08g00525 725 SUPERFAMILY DNA-binding pseudobarrel domain 104 217 IPR015300 -
Aip08g00525 725 MobiDBLite consensus disorder prediction 540 574 - -
Aip08g00525 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00525 Aip-Chr8 4276109 4280096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00525 5 691 B3 DNA Binding Superfamily AT4G30080 58.369 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip08g00525 B3 4.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00525 - - gmx:100778135 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00525 08 4276109 4280096 Aip08g00525 08 4276109 4280096 ECH
Aip08g00525 08 4276109 4280096 Aip03g00341 03 3320657 3323868 ECH
Aip02g03352 02 110221954 110224324 Aip08g00525 08 4276109 4280096 ECH
Aip08g00525 08 4276109 4280096 Aip03g00341 03 3320657 3323868 PCT