Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00509 ATGACTATTCAGAAGAAACATGATGCTGCTGCAGAAACTCTTTCATGCAAACGAACACTTTCACTTCCACTTCACGGGTTTGATGATTCAATGGGGTTGAATGAAGAAACCACAGATGTTCATGATTGGAAAGAACAGAATCTTGTGGCGGATATAGCATCATCAAGAACATGTTCATCATCAGAAGAGGCAAAATCTCAGGATTATGTAGCCATAAAGATGCCATTGACACCAAGTCCAACTCCAACTCATAAGAGAGTCAATTTTCTTGTGACTTCTCGTTCTGTTGATGCCCCAATAAATACTACTTCTTCTTCTTCTTCATCATCTTCTTCAGGACCCTCATCTAGAACTAAATCATCATCATCATCATCATCATCATCATCCATAAGAAACATATTGCCAAAATTCACCTTAAGGAATCATAGGACACCGAATTCGGATATCGAAAAGGCTAATATTTTAGCTCCAGAATGTTCCTCTTTAGATCATCATCAAGAGAAAGACAAGTCTTCTTCAATCTCAAGATCGGTGTCCCTCACTAAGATGTTCACAACTAAGATCAAGAGAACTTCATCATTACCTGTAGAAGAATTGGGTCATGCAAACACAGATTCTGTTCAGGCTGCAATTCTTGGTGGTTCTCCATGTAGGGTAGAGACTCAGGGGATGATAGCTCGGTCTCGTTCAGTACCTATCAATACCAAAGAAAAAGGCCATAGGAGAATGGATTCATTCTTCCGTGTTGTTCCTTCCACTCCTCTATTAAAAGAAGGGAATGATTGGTTAACCAAGTACACAACAAAAGATACTGAAAATGGAGATGATGATGATGATGATGATGATGGAGAAGATATAGCTGAAGAAGAAGCTGTGTGCAGAATATGTCTGATTGATCTGTGTGAAGGAGGGGAGACACTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTTGCTCACAAAGACTGTGCCATTAAATGGTTCACTATCAAGGGCAACAAGACCTGTGATGTTTGTAAGGAGGAGGTTAGGAACCTTTCTGTCACCCTCTTACGCATTCGAAATGTTCAAACTCAGAATAATCCTGGAGCAAGCTCTCAGCACCATGATGATTACAGGTTTTGGCAGGAACTGCCAGTGCTTGTGATTGTGAGCATGCTTGCCTATTTCTGTTTCCTTGAACAGTTATTGGTTGGTGAAATGGGGCACAATGCAATTTCCATATCTCTTCCATTTTCTTGTGTATTAGGCCTACTGTCTGCCATGACATCAACCACCATGGTGAAGAGCAAGTTCACATGGGTTTATGCATCTGTCCAATTAGTTCTGGTGGCTCTCTTTGCACACATATTTTACTCCCTGAATGGTCAATTTCAGGTTACCAAGAGAGCAATTCTGTCAATAATTCTTGCAACATTTGCTGGGTTTAGTGTGGTGATGAGTGGAAGTTCAATTATTGGTGAGATTCTTAGATGGAGGAGAACTTGGCAGCAACAACAACAACAACAACAAAGTGGAGGAGTGCAAAATCAACACAACTCAAATCACACCTGA 1557 0.4072 MTIQKKHDAAAETLSCKRTLSLPLHGFDDSMGLNEETTDVHDWKEQNLVADIASSRTCSSSEEAKSQDYVAIKMPLTPSPTPTHKRVNFLVTSRSVDAPINTTSSSSSSSSSGPSSRTKSSSSSSSSSSIRNILPKFTLRNHRTPNSDIEKANILAPECSSLDHHQEKDKSSSISRSVSLTKMFTTKIKRTSSLPVEELGHANTDSVQAAILGGSPCRVETQGMIARSRSVPINTKEKGHRRMDSFFRVVPSTPLLKEGNDWLTKYTTKDTENGDDDDDDDDGEDIAEEEAVCRICLIDLCEGGETLKMECSCKGELALAHKDCAIKWFTIKGNKTCDVCKEEVRNLSVTLLRIRNVQTQNNPGASSQHHDDYRFWQELPVLVIVSMLAYFCFLEQLLVGEMGHNAISISLPFSCVLGLLSAMTSTTMVKSKFTWVYASVQLVLVALFAHIFYSLNGQFQVTKRAILSIILATFAGFSVVMSGSSIIGEILRWRRTWQQQQQQQQSGGVQNQHNSNHT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00509 518 PANTHER OS02G0165000 PROTEIN 36 507 - -
Aip08g00509 518 SUPERFAMILY RING/U-box 289 344 - -
Aip08g00509 518 SMART ringv_2 292 341 IPR011016 GO:0008270
Aip08g00509 518 Pfam RING-variant domain 293 340 IPR011016 GO:0008270
Aip08g00509 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 350 IPR013083 -
Aip08g00509 518 ProSiteProfiles Zinc finger RING-CH-type profile. 285 347 IPR011016 GO:0008270
Aip08g00509 518 MobiDBLite consensus disorder prediction 98 130 - -
Aip08g00509 518 CDD RING_CH-C4HC3_MARCH 293 341 - -
Aip08g00509 518 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00509 Aip-Chr8 4112974 4115711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00509 279 348 C3H Transcription Factor Family AT2G37950 46.479 5.41e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00509 - - gmx:100815599 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00509 08 4112974 4115711 Aip08g00509 08 4112974 4115711 ECH
Aip08g00509 08 4112974 4115711 Aip03g00361 03 3472599 3476742 PCT