Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00500 ATGATGATGTCCTTTTCATCATCAACATCAGCAGTGGCTCCTTCCAGTTACCGAAACCCTAATTCAATTCCAGCAGCAGTGAAGAGAAAGCGAAGTCAACCAGGAAGACCAGATCCAGAGGCAGAAGTAATAGCTCTATCGCCAAAATCGCTGATGGCGACGAACCGTTTCGTATGTGAGATATGCAAGAAAGGGTTCCAGAGGGAGCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTTCGGCAGAGGGAGAAGGAGGAGGTGGTGCGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTCCACCACGAGAGTTGTCGTGCGCTGGGGGACTTGACGGGGATAAAGAAACACTACAGCAGAAAGCACGGCGAGAAGAAGCTGAAATGCGAAAAGTGTTCCAAGAAATACGCTGTTCACTCTGATTGGAAGGCTCATACCAAGATCTGTGGCACCAGAGAGTATCGTTGTCACTGTGGCACTCTCTTCTCCAGGAAGGACAGCTTCCTCACTCACAGATCTTTTTGTCAAGCCTTGCCTCAACCAATCAATTCTCAATTTCATACTGCTTCTTCCATGGCACCACCATCACTACCACTATGGCTTGACCAAACAATCAACCAAGACAACAAACTCGGAGACTTGTTCTACTCATCATCATCATCATCCACACTCATGTCGGCCACTGCGTTGTTGCAGAAAGCTACACAAATGGAATCTACTCCTATCGCTTCTAACAACGACAATAATGCCTTTGTTGGATTCATGCTCAGCTCTTCGTCTCAGTTCTCCTCCTTCAATAACGATTCAAACTTGATGCAACACCCACTTGGGTTGACCAGAGACTTTCTTGGCGTTGGGGTCACCACCAGGTTCATGAATAATCCAATGGGATCCCTCGTCGACCTCCAAACCAATCCTCTTCATCATCAAGAATATATGTAG 963 0.4839 MMMSFSSSTSAVAPSSYRNPNSIPAAVKRKRSQPGRPDPEAEVIALSPKSLMATNRFVCEICKKGFQREQNLQLHRRGHNLPWKLRQREKEEVVRKKVYVCPEKSCVHHESCRALGDLTGIKKHYSRKHGEKKLKCEKCSKKYAVHSDWKAHTKICGTREYRCHCGTLFSRKDSFLTHRSFCQALPQPINSQFHTASSMAPPSLPLWLDQTINQDNKLGDLFYSSSSSSTLMSATALLQKATQMESTPIASNNDNNAFVGFMLSSSSQFSSFNNDSNLMQHPLGLTRDFLGVGVTTRFMNNPMGSLVDLQTNPLHHQEYM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00500 320 MobiDBLite consensus disorder prediction 1 40 - -
Aip08g00500 320 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 16 187 - -
Aip08g00500 320 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Aip08g00500 320 Gene3D Classic Zinc Finger 53 80 - -
Aip08g00500 320 MobiDBLite consensus disorder prediction 1 22 - -
Aip08g00500 320 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Aip08g00500 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Aip08g00500 320 SMART c2h2final6 99 129 IPR013087 -
Aip08g00500 320 SMART c2h2final6 57 79 IPR013087 -
Aip08g00500 320 SMART c2h2final6 134 154 IPR013087 -
Aip08g00500 320 Gene3D Classic Zinc Finger 91 183 - -
Aip08g00500 320 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00500 Aip-Chr8 4032179 4033823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00500 28 292 IDZ Gene Family AT4G02670 53.268 2.60e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g00500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00500 K25870 - adu:107461721 545.814