Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00499 ATGGAAGAAGGAGGAGGAGATCAACATGCCTCTAACAGCAGCTACACTTTTCCACCAGGTTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACCTACAAAACAGAATCAGCTCTCGTCCACTTCCAGCTTCCATTATAGCTGAGATTGATCTTTATAAGTATAACCCTTGGGATTTGCCAAAGAAGGCTTTGTTTGGAGAGGAAGAATGGTACTTCTTTAGCCCGAGAGATCGCAAGTATCCAAATGGATTGAGGCCAAACAGGGCAGCAGGTTCAGGGTACTGGAAGGCTACCGGAACTGACAAGCCGATTCTCACTTCTTATGGATCGAAGCGCATCGGAGTGAAGAAAGCTCTTGTCTTCTATTTAGGTAGACCTCCAAAGGGGACTAAAACTGATTGGATCATGAATGAGTATAGATTGGTTGACACAATCACCAGCCCCTCCAGGCTCAAAGGTTCCATGCGCTTAGATGACTGGGTACTCTGTCGCGTTCGACACAAAGGCTACTCATCGAAGAACTCATGTGAGAATCAAGATAATCCTTGTGAACCAAACATGCTACCAAATCTGCCAAGGTGTGATGAAGGTTATCCAGCAACAAACATGAACTTTCATGCTGATATGATCACTGATTATCAATACAAAGACTATCAGATCCTAGCTTCTATTCTTGTTGGTGGCCATGTTCCTACCACTGAGAGCATGTCAAGTTTGAACTTGAAGGATGGCAAAGGCAATGATCCAATAACTTCAGTTCATGAAGATGGTTTCCACAGAGAAGATTCTTCTACAACAGTTTCTCCTTTGGACTGTTACTTCAACTCACTGAAAAGAAAATCTAATGAGGATAACCAATATGAGAATCTCATTTCCTTTAACAGGAAGTTGAACATGGAGACCGCAATGGATGATGAATCTTCTATCATTAATGGAGGTTTGAACTTCTACAATCAAAACCAGTCTCAAGATGACATAATATTCAATAAGAGAGCAGCAGAGCCTAGCATCAACTTTCAAGAGCTAAAGCAATCAGCTTTTATAGGAAGATACCCACAATGCTCAAGTGATTGA 1083 0.4174 MEEGGGDQHASNSSYTFPPGFRFHPSDEELIVHYLQNRISSRPLPASIIAEIDLYKYNPWDLPKKALFGEEEWYFFSPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTSYGSKRIGVKKALVFYLGRPPKGTKTDWIMNEYRLVDTITSPSRLKGSMRLDDWVLCRVRHKGYSSKNSCENQDNPCEPNMLPNLPRCDEGYPATNMNFHADMITDYQYKDYQILASILVGGHVPTTESMSSLNLKDGKGNDPITSVHEDGFHREDSSTTVSPLDCYFNSLKRKSNEDNQYENLISFNRKLNMETAMDDESSIINGGLNFYNQNQSQDDIIFNKRAAEPSINFQELKQSAFIGRYPQCSSD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00499 360 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Aip08g00499 360 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Aip08g00499 360 PANTHER NAC TRANSCRIPTION FACTOR 56 13 313 - -
Aip08g00499 360 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 313 - -
Aip08g00499 360 SUPERFAMILY NAC domain 11 171 IPR036093 GO:0003677|GO:0006355
Aip08g00499 360 ProSiteProfiles NAC domain profile. 17 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00499 Aip-Chr8 4022732 4024097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00499 3 180 NAC Transcription Factor Family AT1G61110 64.516 1.32e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g00499 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00499 - - gmx:100817193 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00499 08 4022732 4024097 Aip08g00499 08 4022732 4024097 ECH