Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00498 ATGACGGTGGTAGACATCCTGTTCCGGGTGGACTCCATATGCAGCAAATACGACAAATACGACCTCGACAAGCAGCGGGAACTCAATGCCTACGGTGATGACGCCTTCGCTCGCCTCTACGCCACCGTTGATTCCACCATCGAAGCCGCCCTCAAGAAATCGGATGCTGCCTTGGCAGAGAACAACAGAGCAGCTGCTGCTGCTATGAATGCGGAGGTTCGACGCGCCAAGGGTAGACTCATGGACGAGATTCCCAAGCTCCGCAAATTGGCCAAGAAGAAGGTTAAAGGTTTGACAGACGAAGATTTGGCGATCCGTGAGGATCTTGTATTGGCATTGCCAGAAAGAATCCAAGCAATACCCGATGGTATTACCACTGTCAATCAAACTGGAGGAGGATGGACATCGCAGCCCAACATCAAGTTTGATTCAGACGTGCATCACGGCACTGATTATTTCGACCAAACTGAAGAATCCAGTCAGTTCAGAAATGAGTATGAAATGCGCAGGATCAAACAGGATGAGGGTCTTGACTTCATATCGGAGGGATTGGATACTTTGAAAAATCTAGCTCATGACATGAGTGAGGTTTGTTATGAATCTACCCTACTTTTTTTAATTTGGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATAGGCAAGTTCCTCTAATGGACGAAATTGACACAAAGGTCAATAGGGCAACAGCTGATGTGAGAAACACTAACAAAAGATTGAAGCAAAGTCTCACTGAGATGAGGTCTACTCAAAATTTCTTCATTGACATCATTCTGCTCTGTATTCTTATCAGCATTGTTCTCTATATATACAATCAACTGAGGTGA 855 0.4363 MTVVDILFRVDSICSKYDKYDLDKQRELNAYGDDAFARLYATVDSTIEAALKKSDAALAENNRAAAAAMNAEVRRAKGRLMDEIPKLRKLAKKKVKGLTDEDLAIREDLVLALPERIQAIPDGITTVNQTGGGWTSQPNIKFDSDVHHGTDYFDQTEESSQFRNEYEMRRIKQDEGLDFISEGLDTLKNLAHDMSEVCYESTLLFLIWRXXXXXXXXXXXXDRQVPLMDEIDTKVNRATADVRNTNKRLKQSLTEMRSTQNFFIDIILLCILISIVLYIYNQLR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00498 284 PANTHER SYNTAXIN 222 281 IPR045242 -
Aip08g00498 284 Coils Coil 228 248 - -
Aip08g00498 284 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 252 IPR000727 -
Aip08g00498 284 Gene3D - 154 281 - -
Aip08g00498 284 CDD SNARE_Qc 172 251 - -
Aip08g00498 284 Pfam SNARE domain 227 277 IPR000727 -
Aip08g00498 284 PANTHER SYNTAXIN 1 196 IPR045242 -
Aip08g00498 284 PANTHER SYNTAXIN-72 1 196 - -
Aip08g00498 284 PANTHER SYNTAXIN-72 222 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00498 Aip-Chr8 4020765 4022144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00498 1 284 SNARE and Associated Proteins AT3G09740 57.785 3.86e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00498 K08506 - gmx:100817729 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00498 08 4020765 4022144 Aip08g00498 08 4020765 4022144 ECH