Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00495 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCAACTTGCAATGGTGGCTGTCACAAAGAACAAGCAACTGCTTCTTGTGTGTGCTGTGTGCCATCATCATCATCATCATCATCCTCATCCTCTGCTGTGTCTTCTTCTTCGTATCTGGAGCTATGGCATGCTTGTGCTGGCCCTCTTACTTCTCTCCCAAAGAAGGGGAATGTGGTTGTCTACTTCCCACAAGGGCACTTAGAGCAAGCTGCATCTTTCTCTCCCTTCACACCATTGGAGATTCCAACACATGATCTTCAACCACAGATCTTCTGTAGAGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTTCCCCAAGCTGAGTTGGCAGGGATGGGGAAAGAGCTTCTTGAGGAATTGGGAGCTGATGAAGAAGGAAATGGAAGAACACCTACAAAAACAACACCTCACATGTTCTGCAAGACACTCACAGCCTCTGATACAAGCACTCATGGTGGTTTCTCTGTTCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTATTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCGAGGCGGCATCTACTCACTACCGGATGGAGTATTTTCGTTAGCCAAAAGAATCTTGTGTCCGGTGATGCTGTGCTTTTCCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAGTCTATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCAGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGATTTTGTTGTATCCTATCAAAAGTATGCCAAAAGCATCAAGAATCCGGTGACCATTGGCACAAGATTCAAAATGAAATTTGAAATGGATGAATCACCTGAAAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCATACAGATGGCCTAAATCAAAATGGAGGTGCTTAATGGTCAGATGGGATGAGGATATGGAGACTAATCATCAGGATCGAGTATCTCCATGGGAGATCGATCCTTCGGCTTCTCTCCCTCCATTGAGTATGCAGTGTTCCCCAAGGCTGAAGAAACTGCGGACAGGTCTGCAGGCTGCATCATCCAGTCACCTCATCACTGGAGGCACTGGGTTTATGGACTTGGAGGAGTCTGTAAGATCGCCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCCCTATATTTTGGACGTGACACAGTAACTAAGCAGCCAGGTTTTGAGATCAGTTCTCCCAATCATCCGAATCTTGCATCGGCCGGAGCAAGAAAGATGACTGCTGCTGAGCTTATGAGGGTTCACCCTCCTACATATGCAGGCTTCGTGGAACCTAATAATAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCACTAAGGTCCCTGACAGGGAAGGTTGATATAAACCTCGGTGCTTGGGGTAATAAACCAAGTAGTGCAAGTTGCACAACTTTCAACCTGCATCAAGCTACCAGACCAAAATTTGATTCTTTAGGATCAGAAGTCCTTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGTCATGGTAGCAGCATGTTGTGCTCTAAACCGTCGAGTTTCCAAAGAGATATTGCGCCATTTAACACTCCTCTGACTCAGGCAGGGATAATTAGAAATGAAATTGGAAGGTCTGGCCCTTCAATCATGCATGAGCAGAAGCTGCCGGAGAATGTTTCCGTGGTTTCTTCTTTAGGGGGAAACAGCATGAGGATGCCAGTTCCGGATGAAGAGAATCTCAAGGGGAAGATAAATGGATGTAAACTATTTGGAGTTGCCTTGTCTGGAGAAACTACCACCCAAAACGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATCGATCTCTCAAGATTGAGCAGCTACACTGATCTCTTCACTGAACTTGAGAGACTCTTTGGCATGGAAGGCCTACTAAGAGATCCTGATAAGGGATGGAGGATCCTGTACACCGACAGCGAAAATGACATCATGGTTGTCGGGGATGACCCATGGCATGAGTTCTGCAATGTGGTATCAAAGATTCATATATATACACAAGAGGAAGTGGAGAAGATGACAATTGGGATTATCAGTGATGATACACAGAGCTGTTTGGAACAGGCACCAGTCAATATGGAGGCTTCTAAGTCTTCCTCGGTGGGTCAACCAGATTCTTCCCCAACAGTAGTTAGAGTCTAG 2421 0.4494 MEIDLNHAVTEVEKNATCNGGCHKEQATASCVCCVPSSSSSSSSSSAVSSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFTPLEIPTHDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMGKELLEELGADEEGNGRTPTKTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVSYQKYAKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYRWPKSKWRCLMVRWDEDMETNHQDRVSPWEIDPSASLPPLSMQCSPRLKKLRTGLQAASSSHLITGGTGFMDLEESVRSPKVLQGQENTGFMSLYFGRDTVTKQPGFEISSPNHPNLASAGARKMTAAELMRVHPPTYAGFVEPNNRFPRVLQGQEICPLRSLTGKVDINLGAWGNKPSSASCTTFNLHQATRPKFDSLGSEVLQTAYFPYGDIHKAGHGSSMLCSKPSSFQRDIAPFNTPLTQAGIIRNEIGRSGPSIMHEQKLPENVSVVSSLGGNSMRMPVPDEENLKGKINGCKLFGVALSGETTTQNAKRSCTKVHKQGSLVGRAIDLSRLSSYTDLFTELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSCLEQAPVNMEASKSSSVGQPDSSPTVVRV 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00495 806 SMART B3_2 165 267 IPR003340 GO:0003677
Aip08g00495 806 Gene3D - 673 767 - -
Aip08g00495 806 CDD B3_DNA 163 265 IPR003340 GO:0003677
Aip08g00495 806 Gene3D - 163 267 IPR015300 -
Aip08g00495 806 SUPERFAMILY DNA-binding pseudobarrel domain 157 276 IPR015300 -
Aip08g00495 806 ProSiteProfiles PB1 domain profile. 678 762 IPR000270 GO:0005515
Aip08g00495 806 PANTHER AUXIN RESPONSE FACTOR 26 794 - -
Aip08g00495 806 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip08g00495 806 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Aip08g00495 806 Gene3D - 329 401 - -
Aip08g00495 806 SUPERFAMILY CAD & PB1 domains 680 757 - -
Aip08g00495 806 MobiDBLite consensus disorder prediction 785 806 - -
Aip08g00495 806 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Aip08g00495 806 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 794 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00495 Aip-Chr8 3982272 3987107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00495 49 806 B3 DNA Binding Superfamily AT5G60450 60.598 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip08g00495 B3 1.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00495 - - ahf:112706773 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00495 08 3982272 3987107 Aip08g00495 08 3982272 3987107 ECH
Aip08g00495 08 3982272 3987107 Aip03g00378 03 3607104 3611920 PCT