Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00490 ATGGAGGCAAGTGACACAAATACCCCTATTTCTTCTTCTCAGTCTCCAACATCCTCATCTTCTCTTCCACCTCCGCCGCAGCCTACAGCAGCGCAAGTGATAATGAGCCCTTGCGCTGCTTGTAAAATTCTTCGGCGGAGGTGTGCGGAGAAATGTGTGTTGGCCCCTTATTTTCCTCCAACTGAACCTGCCAAGTTCACCACCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGAGTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAGGTGCAAGGATAAGAGATCCGGTTTACGGTTGCGCCGGCGCCATTTGCCAGCTTCAGACGCAAGTCAATGAGCTTCAAGCACAGTTAGCCAAGGCTCAAGCTGAGATTGCCAACATGCAGTTTCAACAGGCCAATATGGTGGCTCTTCTTTACATGCAAATGGCGGAGGCTAATAAGGCTACCGCCACCACACAAGAACCGCCACCGTCACCGCAACAATCGGTGGACAACTTCATTGCAAGCCCTCCTCACATCAACAATAATCTCAACTTCTTTGACGACAACACTAGCCTCAACTCCATGTGGGAGCTTTTTGGACATGACCATATCACTACGTTTTAA 645 0.4915 MEASDTNTPISSSQSPTSSSSLPPPPQPTAAQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAEIANMQFQQANMVALLYMQMAEANKATATTQEPPPSPQQSVDNFIASPPHINNNLNFFDDNTSLNSMWELFGHDHITTF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00490 214 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Aip08g00490 214 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Aip08g00490 214 MobiDBLite consensus disorder prediction 161 180 - -
Aip08g00490 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 205 - -
Aip08g00490 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 205 - -
Aip08g00490 214 Coils Coil 116 143 - -
Aip08g00490 214 MobiDBLite consensus disorder prediction 1 18 - -
Aip08g00490 214 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00490 Aip-Chr8 3880830 3904159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00490 2 195 AS2 family AT2G28500 59.694 5.86e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip08g00490 LOB 5.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00490 - - gmx:100789504 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00490 08 3880830 3904159 Aip08g00490 08 3880830 3904159 ECH
Aip08g00490 08 3880830 3904159 Aip03g00393 03 3750519 3752332 ECH
Aip08g00490 08 3880830 3904159 Aip03g00393 03 3750519 3752332 PCT