Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00476 ATGTTCGATCTTAACCTGAATGCCGATTCCACTCAGCACGATGACTCGCCCGTGCTGCTCGGGGAGAAGATTCCGGAAGCGTCCTCCGGGACCTCGAATTCCTCCGTGGTGAATGCGGAGGGTTCGAGCAACGGAGGTGGTGCCGGAGACGACGACTCGTGTTCCACACGCGCCACTGGCAGCGGCGATGTGTACACCTTCAATTTCGATATTCTGAAGGTGGAAGGCGGGAGCGACAGCTCCGTCGCGACGAAGGAACTGTTTCCGCCGCAGCAGCAGCAGCTTGGCGTTATGCGGCAGCAGGCTGGGTTGTACGGCGGCCAAATGAATTTCGGCGGTTCTGCTTCGGCGGCAGGTCAGCTGCAGAATCAGCAGCAGCAGCAGCAACAACAGCCTCCGCAAGCGAAGAAGAGTAGGAGGGGCCCACGCTCAAGGAGCTCGCAGTACAGAGGTGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGTTCGCACCCTTCTGTGTTCCAATGAAATTTGTATTGGGCCTTGTAGGTGGATTTGACACCGCTCATGCCGCTGCTAGAGCTTATGATCGAGCTGCTATCAAGTTTAGGGGACTTGATGCTGACATCAATTTTAATCTCGTTGACTATGAGGACGATCTCAAACAGATGAAAAATCTCTCCAAGGAGGAATTTGTTCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGAGGAAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCAAATGCAATGGAAGAGAGGCAGTCACTAACTTCGAGCCAAGTACGTATGAAAGCGAGGTCAAAACTGAAGCCATTAGTGAAGGTGGCAGTCACAACCTTGACCTCAATTTAGGCATGGCTACCCCAGGACATGATCCCAAAGAAAACAGGGGGAATCTTCAGTTCCAGTCTGTCCCTTACGATGTGCATCCCGGAAGAAGTTCGAGGGTATATAGCTGA 1095 0.5187 MFDLNLNADSTQHDDSPVLLGEKIPEASSGTSNSSVVNAEGSSNGGGAGDDDSCSTRATGSGDVYTFNFDILKVEGGSDSSVATKELFPPQQQQLGVMRQQAGLYGGQMNFGGSASAAGQLQNQQQQQQQQPPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWFAPFCVPMKFVLGLVGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEVKTEAISEGGSHNLDLNLGMATPGHDPKENRGNLQFQSVPYDVHPGRSSRVYS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00476 364 SUPERFAMILY DNA-binding domain 246 305 IPR016177 GO:0003677
Aip08g00476 364 SUPERFAMILY DNA-binding domain 147 211 IPR016177 GO:0003677
Aip08g00476 364 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 ProSiteProfiles AP2/ERF domain profile. 148 211 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 Gene3D AP2/ERF domain 147 213 IPR036955 GO:0003700|GO:0006355
Aip08g00476 364 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Aip08g00476 364 MobiDBLite consensus disorder prediction 1 55 - -
Aip08g00476 364 Pfam AP2 domain 246 296 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 MobiDBLite consensus disorder prediction 115 149 - -
Aip08g00476 364 MobiDBLite consensus disorder prediction 115 137 - -
Aip08g00476 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 343 - -
Aip08g00476 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 343 - -
Aip08g00476 364 MobiDBLite consensus disorder prediction 26 55 - -
Aip08g00476 364 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 SMART rav1_2 148 217 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 MobiDBLite consensus disorder prediction 319 364 - -
Aip08g00476 364 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Aip08g00476 364 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00476 Aip-Chr8 3739421 3745279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00476 90 330 AP2-EREBP Transcription Factor Family AT4G36920 66.803 2.28e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip08g00476 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00476 K09284 - gmx:100777102 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00476 08 3739421 3745279 Aip08g00476 08 3739421 3745279 ECH
Aip08g00476 08 3739421 3745279 Aip03g00405 03 3936310 3940238 ECH
Aip08g00476 08 3739421 3745279 Aip03g00405 03 3936310 3940238 PCT