Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00470 ATGGGTTGCTTGCGTTGCATAGGAAAACCACGAAAAAGATTAGTCAGCAATGTATATAGCAATAATAGCCCCAAACACAGCAACAATAATAAAAATAATGCCTTTGAGGAGAGGAATAAGGGCAGAGTTGGTTTGAATGTGAAAGCGAATGTTAAAAGAGAAGGCAATTCCAATGATGATGAAAATCAACTTTCTTTGGACGTGAAGAAGTTGAATTTGAGAGATAACAATGGAAACCCCAGCAACGTCAACAAAGCGATGACCTTTACTTTTGATGAGCTTGCAGCTGCAACAGGGAATTTCAGGCCTGATTGTTTTCTTGGTGAAGGAGGGTTTGGCAAGGTTTACAAGGGCCACTTGGAGAGCATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTCATGGCCTTCAAGGAATTAGGGAATTTGTTATAGAAGTTTTGACTTTGAGTTTGGTAGATCATCCTAATCTTGTCAAGTCGATTGGGTTTTGCGCCGAGGGAGATCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGCACCATTTACATGATCTTCCACCGGGAAAAAGACCGATAAGTTGGAATACAAGGATGAAAATCGCGGCCGGTGCAGCGAAGGGGTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATTTACCGTGATCTGAAATGCTCTAACATTTTGCTAGATGAGAAATATCATGCCAAATTGTCTGATTTCGGCTTAGCGAAAGTAGGCCCGAGTGGTGATAAGTCTCATGTTTCGACGAGGGTTATGGGCACATATGGTTATTGTGCTCCAGATTATGCAATGACGGGTCAGTTGACATTCAAGTCTGATATTTACAGCTTTGGTGTTGTTCTTTTGGAGCTCATCACAGGAAGGAAAGTCATTGACCATAGAAGACCTGAAAAGGAAGAAAATCTAGTTGCATGGGCAAGGCCTTTATTCAAAGACCGGAAAAGATTCTCAGAGATGGTTGATCCATTGCTTGAAGGTAAATATCCAGTGAGAGGCCTGTACCAAGCTCTTGCCATTGCCGCGATGTGTCTACAAGAGCAGCCTAATATGCGGCCTAACACGGCCGATGTGGTTACAGCTCTAGACTTCCTTGCTTCGCAGAAATACGATCCTTACACTCATCCAGTCTCAAAAAGTCCATCTCCAAATCGAAAAATGGATGACCAATGGTCTGTCCCAAGCACCGGTTCTGAGACAGAAAGGAGTGATGACCCCGAATGTTCTGTTAGAAATGGTTCTGAGATATGA 1290 0.4287 MGCLRCIGKPRKRLVSNVYSNNSPKHSNNNKNNAFEERNKGRVGLNVKANVKREGNSNDDENQLSLDVKKLNLRDNNGNPSNVNKAMTFTFDELAAATGNFRPDCFLGEGGFGKVYKGHLESINQVVAIKQLDPHGLQGIREFVIEVLTLSLVDHPNLVKSIGFCAEGDQRLLVYEYMPLGSLEHHLHDLPPGKRPISWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLDEKYHAKLSDFGLAKVGPSGDKSHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKVIDHRRPEKEENLVAWARPLFKDRKRFSEMVDPLLEGKYPVRGLYQALAIAAMCLQEQPNMRPNTADVVTALDFLASQKYDPYTHPVSKSPSPNRKMDDQWSVPSTGSETERSDDPECSVRNGSEI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00470 429 MobiDBLite consensus disorder prediction 386 429 - -
Aip08g00470 429 Pfam Protein kinase domain 107 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00470 429 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Aip08g00470 429 Gene3D Phosphorylase Kinase; domain 1 70 177 - -
Aip08g00470 429 SUPERFAMILY Protein kinase-like (PK-like) 88 404 IPR011009 -
Aip08g00470 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Aip08g00470 429 MobiDBLite consensus disorder prediction 386 412 - -
Aip08g00470 429 ProSiteProfiles Protein kinase domain profile. 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00470 429 SMART serkin_6 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00470 429 PANTHER OS07G0668900 PROTEIN 1 394 - -
Aip08g00470 429 Gene3D Transferase(Phosphotransferase) domain 1 178 391 - -
Aip08g00470 429 MobiDBLite consensus disorder prediction 413 429 - -
Aip08g00470 429 MobiDBLite consensus disorder prediction 17 40 - -
Aip08g00470 429 CDD STKc_IRAK 107 376 - -
Aip08g00470 429 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00470 Aip-Chr8 3649608 3653088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00470 1 415 Glycoside Hydrolase AT3G07070 53.606 5.92e-148 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Aip08g00470 Pkinase 9.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00470 - - gmx:100794680 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00470 08 3649608 3653088 Aip08g00470 08 3649608 3653088 ECH