LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g00468	ATGGAGCAGTCAGCAGGGAAATCACCGAAGAAATCACCACTCAAACCGTTTCCCAGAGATCCACGTGGCTCCCTCGAAGTCTTTAACCCTGCCTCCTCCTACTCCACCGCATCCGCAGCGGGCAATCCTACCGGCTCGCCGGCGGCGGCGCGTCCTCAGCCTATATGGAAAACCTGGGCGGCAGAGCAGCAGCTGCCACGCAGTAACTCCTTGGAGGAGCTGACCACCACTGCCGCCACGTCCACAACAACCACTGCCACCTCCTGGATGGCACTTAAGGAACCCATTCCGCTGGCGAGTTCGGAGTCTGGTGCGGCGGCGCAGAGAGCTGCAGAGTGGGGATTAGTACTGAAAACGGACACGGAGACCGGGAAGCCTCAGGGAGTGGCGGTTCGAAACTCCGACGGCGGCGGTTCCTCCCGGAGGAACTCGAAAAACTCAGCTCGCACCTCCGGCGACTCCTCGGAGGAAGCGGAATCGCGCGGGATCCCGAGAGTATCGGAGGACCTGAAGAACGCCCTTTCGGCGTTTCAACAAACTTTCGTGGTTTCTGATGCTACCAAAGCCGATTACCCGATCCTTTACGCCAGTGCCGGGTTCTTCAAGATGACTGGTTACACCTCCAAGGAGGTGATAGGTAGAAACTGTCGGTTTTTACAGGGTGCGGAAACGGATCCGGATGACGTGGCAAGCATAAGGGAAGCATTGGAAGCTGGGAAGAGTTACTGTGGAAGGTTGCTGAATTACAAGAAGGATGGGACGCCCTTCTGGAACCTTCTTACTATTTCACCCATCAAGGACGAGGATGGCAAAGTCATCAAATTCATAGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGGCCAAGGAGAAGGCGTTACGTCCCAATGGCTTGCCTGAATCATTGATTCGATATGATGCACGGCAAAAAGAGAATGCTACAACTTCAGTAACGGAGTTGGTGAGTGCCATAAAGCGTCCTCGAGCACTCAGTGAATCAACAAACCGCCGTCCCTTCATCAGAAATTCATCCGGAGTCGCTGACCGTCATCAACAAGAAGAGGCAGAGCACAAAACAGAGAAAACATCAAGGAGAAAATCTGAGAGCGTAGCTTCATCTGCTAGACGCAAATCACAAGGAGAAGGAGGACATGGATTAACTTCATTGCAGCAAATCAGTGAGGTCCCTGAAAAGAAGCAGAAAAACTCCCGTCGCCGTTCTTTCATGGGGTTCATGAAGAAAAATCAGGCAAATGAAGAAAGCATAGATAACGAAGGTGTTGAGGAAGTGAGCTCAGAGAGTGAGGATGATGATGACAGGCCTGATAGTTTTGAATTTGAGGGCAAAGAGATCCAAAGGGAGAAGAGGAAAGGTCTTGATCTTGCCACCACACTTGAACGTATTGAGAAAAACTTTGTCATCACTGATCCTAGGCTCCCTGACAATCCCATTATATTTGCTTCTGACAGCTTCTTAGAGCTTACTGAATATAGTCGTGAAGAAATCTTGGGCAAAAATTGCAGATTTCTTCAAGGACCTGAAACAGATCCAGCAACTGTGAAAAAAATTAGACAAGCCATTGACAACCAAACTGAAGTTACTGTACAACTCATTAATTATACAAAGACAGGTAAAAAGTTCTGGAACTTGTTCCATCTGCAACCTATGCGTGACCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTCGACGGTAGCCAACATGTGGAGCCTCTTCACAACTGCATCGCAGAAAATACTGCAAAAGAAGGAGAACAACTGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTAAGAGAACTTCCGGATGCTAATATGAAACCGGACGATTTATGGATGAATCATTCAAAAGTGGTTCAGCCAAAACCTCATAGGAAGGAAGATGCTGCTTGGAGAGCTATCAAGAAGATCCTGGACAGTGGAGAACAGATAGGCTTAAAGCACTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTGCATCTAGTGGAGCTATGTGGAACTGGTCACCATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGACATGTTGGACCATCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAATCACATGTTTGTTTGATAACTGATTACTGCCCTGGTGGAGAACTGTTCCTGCTTCTTGATCGACAGCCAACAAAAGTTCTTAAGGAAGAGGCTGCCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTATCTTCATTGTCAAGGAATAATATATCGGGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAATGGACATGTGGCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTGCTTCTACCAGCCACGGATGACAAGAAGAAAAAGAAGAAAAAACAACAAAAAGGTCAACAGGTTCCGGTGTTTATGGCTGAACCCATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATATCTGGTTCAGGCCACACTAGTGCTGTGGATTGGTGGGCTCTTGGTGTTCTTCTATATGAAATGCTTTATGGGTATACACCATTCAGGGGAAAGACAAGGCAAAAAACATTTGCAAATATTCTACACAAGGATCTTAAATTTCCCAAAAGCAAACCAGTAAGTCTCCAGGGAAAGCAGCTAATTTATTGGTTGTTGCAAAGAGATCCCAAAGATAGATTGGGTTCACAAGAAGGAGCAAATGAAATTAAGCGTCATCCATTCTTTAAGTCTGTTAATTGGGCATTAGTCCGCTGCATGGGTTTTCTCAGATTCGCCTCTTTCTCCTTTTTCATCGCACTGTGCAACAACAATCGTTCATTCTCTCTTTCTCGCGCCTTCGCTGCTCTCCTACGCGTCGGGTTTCGATCCTCGCTTCTCTCTCGATTGAGGGTTTTAACTATTGATTGA	3033	0.4669	MEQSAGKSPKKSPLKPFPRDPRGSLEVFNPASSYSTASAAGNPTGSPAAARPQPIWKTWAAEQQLPRSNSLEELTTTAATSTTTTATSWMALKEPIPLASSESGAAAQRAAEWGLVLKTDTETGKPQGVAVRNSDGGGSSRRNSKNSARTSGDSSEEAESRGIPRVSEDLKNALSAFQQTFVVSDATKADYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVASIREALEAGKSYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVIKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKENATTSVTELVSAIKRPRALSESTNRRPFIRNSSGVADRHQQEEAEHKTEKTSRRKSESVASSARRKSQGEGGHGLTSLQQISEVPEKKQKNSRRRSFMGFMKKNQANEESIDNEGVEEVSSESEDDDDRPDSFEFEGKEIQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATVKKIRQAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAENTAKEGEQLVKQTAENVDEAVRELPDANMKPDDLWMNHSKVVQPKPHRKEDAAWRAIKKILDSGEQIGLKHFRPVKPLGSGDTGSVHLVELCGTGHHFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKSHVCLITDYCPGGELFLLLDRQPTKVLKEEAARFYAAEVVVALEYLHCQGIIYRDLKPENVLIQSNGHVALTDFDLSCLTSCKPQLLLPATDDKKKKKKKQQKGQQVPVFMAEPMRASNSFVGTEEYIAPEIISGSGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSQEGANEIKRHPFFKSVNWALVRCMGFLRFASFSFFIALCNNNRSFSLSRAFAALLRVGFRSSLLSRLRVLTID	1010

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g00468	1010	MobiDBLite	consensus disorder prediction	348	373	-	-
	Aip08g00468	1010	ProSiteProfiles	PAC domain profile.	532	586	IPR000700	-
	Aip08g00468	1010	CDD	PAS	193	282	IPR000014	-
	Aip08g00468	1010	ProSiteProfiles	PAS repeat profile.	458	531	IPR000014	-
	Aip08g00468	1010	Pfam	PAS domain	481	573	IPR000014	-
	Aip08g00468	1010	Pfam	PAS domain	189	283	IPR000014	-
	Aip08g00468	1010	MobiDBLite	consensus disorder prediction	62	83	-	-
	Aip08g00468	1010	MobiDBLite	consensus disorder prediction	28	43	-	-
	Aip08g00468	1010	SMART	pas_2	460	529	IPR000014	-
	Aip08g00468	1010	SMART	pas_2	168	237	IPR000014	-

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g00468	Aip-Chr8	3628695	3639534	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip08g00468	1	960	AGC Kinase Gene Family	AT3G45780	69.052	0.0	1322

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Aip08g00468		Pkinase	6.4e-64	CL0016

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g00468	K20715		-	gmx:100817565	1469.52

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip08g00468	08	3628695	3639534	Aip08g00468	08	3628695	3639534	ECH
	Aip08g00468	08	3628695	3639534	Aip03g00413	03	4014599	4025211	PCT

Showing 1 to 2 of 2 entries