Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00455 ATGGCCACGCTTAGTATTTCAAATAGTGCAACCCATGGAGTTGATCGTGTGGCAGACATCAACCCGTCTAAACTAGAATGGTCCGTGGTGGTGGGCGTTGTTCGACTGTACGAGGTTCCGAGTCAGTGGAATCCGGATGAAGCTTTTAGCATCGAGATGATCCTTCAGGATGAACGGGGTGATCGGATCCATTGTAGTGTACCGAGGAACAGCATTGTGATATTTAGGAGTGTTATCCGCGAGCATGAAATCTATTCCATGAAGAACTTCATTGTGCAAGGCTATGGAAAGTCAGTGAGGACTACACCTCACAAATATAAACTAAGTTTTTATATGAAAACGTCTGTGTCTAGACTCACCCCTGACACATTTGTTTTCAACCCGTTTCGATTCACAAAGTATGAAGAAATTGAGGCAATGGCTTCAGTTGTCGCTCAAAACCACTTGATCGATTGCATTGGTCATGTGGTAGCTAAAGAAGATGCAAGAGATTTGGTTACCAAAACTGGGCAACACACTAAACGCATGGTGGTTTACTTGGAGGATTTAGAGGGACATAAGATGAAGTGTACTCTATTTGGCACCTTTGTTGATGAAGTGGTTACATTCTTGCATAGGCCAGATTGTGAGCCATTAGTTATGGTTGCCCAGCTTTTTAAACCATATGTATATTTGAATGATGTTAACATCCAAAGTAGCTTTGACCCTTCTCGAGTATATTGTAATGCTGACTTCCCTGCTGTTATTAGTTTCAAGAAGAGTTTACTTGAGCAAGGTGATCTAGCTTCTCAGAGAATCAATCTTATCGAGAGTCATGGCCAACCTTCCGTCTCTGATGAAATATCTCGAGGAACAATTCCAATCAAGTCAATGGAAGAAGTTCTCAACTTGGACCATGAGACATCATGTTGGGTTGTTGGTACCATAGTTTCTGTCGATGTGGGTTTGAAGGATTGGTTCTACGTATCGTGCAACACATGTCCCAGAAAAGTGCAGCCAAATAAGGACCGCTATTGGTGTGATCATTGTAGAAAGGTTGGGTTTAATGGTGCTCTGAGATATCGTCTTGCTGTCATCCTTACTGATGGTACCGGTTGTATTAAGGTGACCTTATGGAATTCAGAAGCCAAGACTATTGTTGGCAAATCAGCCAGTGAAATACGTGATCCGACTGATACATACCCGGGAAGTTCGTATCCGAAAGCTTTCGATGCGATTGTTGAAAGGAAGTATTTGTTTAAATTGTCTGTGACGTATCGGAATATCAGGTCGGTTGACCAGCCTTACAATGTAGTTAAGATAAGTGATGATGAGTCGCTGATAGGCCTTTATTCGACGGAATCTTCGACTTCCGTTAATATTGGGGCAAGGGTTCACAGTTTTACAACCAGTTTGGGTGGTGGTTCTCATGAAGGGGATCAAAGTTTTAGTGCCACTTTGGATGGTTCTTGCCAATTGGAAACTGAATCAGAAGCAAATGCGTTGGGTTTTATATCTGCATTGAAGGACTCCCCAACTGAAAGCAAATGTGAAAGCGTCCATGCCAGTCCCGTTAAGTCGGTGGTCGGTGAGGTTGTTGACAATGCTATCACGGTAGGGATATGTACTCCAGATGGTCAAGGTTCCAGCAACAAGACATTTAAAAGAAACACTGGAAAGAGGAAGCTAGAGTAA 1674 0.4277 MATLSISNSATHGVDRVADINPSKLEWSVVVGVVRLYEVPSQWNPDEAFSIEMILQDERGDRIHCSVPRNSIVIFRSVIREHEIYSMKNFIVQGYGKSVRTTPHKYKLSFYMKTSVSRLTPDTFVFNPFRFTKYEEIEAMASVVAQNHLIDCIGHVVAKEDARDLVTKTGQHTKRMVVYLEDLEGHKMKCTLFGTFVDEVVTFLHRPDCEPLVMVAQLFKPYVYLNDVNIQSSFDPSRVYCNADFPAVISFKKSLLEQGDLASQRINLIESHGQPSVSDEISRGTIPIKSMEEVLNLDHETSCWVVGTIVSVDVGLKDWFYVSCNTCPRKVQPNKDRYWCDHCRKVGFNGALRYRLAVILTDGTGCIKVTLWNSEAKTIVGKSASEIRDPTDTYPGSSYPKAFDAIVERKYLFKLSVTYRNIRSVDQPYNVVKISDDESLIGLYSTESSTSVNIGARVHSFTTSLGGGSHEGDQSFSATLDGSCQLETESEANALGFISALKDSPTESKCESVHASPVKSVVGEVVDNAITVGICTPDGQGSSNKTFKRNTGKRKLE 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00455 557 PANTHER REPLICATION FACTOR A 1, RFA1 30 221 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g00455 557 PANTHER REPLICATION FACTOR A 1, RFA1 309 460 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g00455 557 Pfam Replication factor-A C terminal domain 318 421 IPR013955 -
Aip08g00455 557 Gene3D - 13 118 IPR012340 -
Aip08g00455 557 SUPERFAMILY Nucleic acid-binding proteins 129 256 IPR012340 -
Aip08g00455 557 PANTHER BNAC01G35430D PROTEIN 30 221 - -
Aip08g00455 557 PANTHER BNAC01G35430D PROTEIN 309 460 - -
Aip08g00455 557 Pfam Domain of unknown function DUF223 52 135 IPR003871 -
Aip08g00455 557 SUPERFAMILY Nucleic acid-binding proteins 15 123 IPR012340 -
Aip08g00455 557 Gene3D - 126 264 IPR012340 -
Aip08g00455 557 CDD RPA1_DBD_C 288 437 IPR013955 -
Aip08g00455 557 CDD RPA1_DBD_A_like 28 116 - -
Aip08g00455 557 SUPERFAMILY Nucleic acid-binding proteins 287 436 IPR012340 -
Aip08g00455 557 Gene3D - 273 440 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00455 Aip-Chr8 3537646 3540240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00455 9 424 Core DNA Replication Machinery Family AT5G08020 21.918 1.22e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00455 - - ahf:112695129 1124.77