Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00437 ATGGCTCAAAGAATAGGGACGAAGTTGTTCGTGAGCAGATTATCGTTTTACACTACCAAAGACCAGTTGAAGAACTTGTTTTCTCCTTTCGGACAAGTTACCGAAGTGAATCTGGTGATGGATTCCAGAACTGGAAGGACCAAAGGATTTGGTTTTGTTTCCTACCAATCTGAAAACGAAGCACTCAAGGCTATCAAAGCCATGAATGGCCGGATAATTGCAGGAAGGATTATTTTCGTTGAACCAGCTAAAGACACTAGATGA 264 0.4167 MAQRIGTKLFVSRLSFYTTKDQLKNLFSPFGQVTEVNLVMDSRTGRTKGFGFVSYQSENEALKAIKAMNGRIIAGRIIFVEPAKDTR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00437 87 Gene3D - 2 87 IPR012677 -
Aip08g00437 87 PANTHER BNAA02G06700D PROTEIN 4 84 - -
Aip08g00437 87 SUPERFAMILY RNA-binding domain, RBD 6 85 IPR035979 GO:0003676
Aip08g00437 87 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aip08g00437 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Aip08g00437 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Aip08g00437 87 PANTHER TRANSFORMER-2-RELATED 4 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00437 Aip-Chr8 3334897 3335695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00437 6 80 Eukaryotic Initiation Factors Gene Family AT1G71770 38.667 5.75e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00437 K13195 - gmx:100781760 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00437 08 3334897 3335695 Aip08g00437 08 3334897 3335695 ECH