Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00428 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATACAAGTTACAGTCAAGAAACCACTGCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTATTGTAGCTGTTGATGAAGATGTCATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGATTTCTTAGTTGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGAAAATTTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTATTTGGGGATTATGTTAATCAAGTGAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTGGTGATTCAGCTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCATCCGCTGTTTATTGCAAATGAGGGTAAAGTTCTCTCATTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTAGTGCAATTCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTATGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTACTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTATATGTGGGGATACTTATCCTCCCATATTCCAAGTGCTCATTGGAAAGAAGTTGCTGCTCAAGGTTGATATCAAAGGTGTCCCACATGATACATTTTATGGGACTTTTCGAGTTAGGAGAATTTGTGATGATTCCACCATTATTGCGATGTTTGAACTACCCGATTATGACGCTAATGACGAGTCTACTCCAAAAAAGGAGCATGATTTACACAAATCTGTTCCTTGTGGAAAAGGAGATGTTGGTATTAAGAAGGAGTTTTCAGATAGTTTTATCAAAAGTGAGAAAGATGCTGGTGAGTATTCTGGGATTTTGTGTAAATCCCCCATTCTTATAGATTTTTTAGCTGGAAAACAGCCTGCTATTTCTGGAGGGACTGAGTTTGTTGCCTTAGATGATGGTGAACATGGAAAAGAAGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTAAACTCGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGGTGTTGTCCCATGTTGTTGACGCATCTTTGCAATATGGAGAGAAGCTTATTCATGAGAATCATGTTGTCACCTCCAAGGGTAAGAGGAATTTGAATCCTCAATTTGAAGAGGCTGCTGTTGATGTAGATGGGCGTGGGTTCAAGGTTGCCAAGGGTGATAGAGCTCTTCCCTCAAGTTTTGTTTCAACTCATGGGGAAGGATTAGGGCCAATATTCTATGTCATTGACGAGTTAGATAATTGTTTATCGCTGGAGGTGATCAGAAAGAATGATCAGTTGCTGATAACTGAGAACTCATTTGAACTGATTAGAACTTTCTATCTTATCGATAGACCGGCATCTGTTCAATTTAGGTATGTTGGTTTTGAAATTTTTTTTATTTCATTGTTCGATAAGGACAACCAACCCATCCAAGTTCACCTTGATCCTGACTGCTATGTTCCTGAGCTAATAGACCCAGAGACACTTGATAATGTGTCAAGAGTCTTCCACATAAAGTATACCAGGATGGAAGAAGACTCATCAGCTGATGTGATTGTTCTATCTGTGTCTGAACCATCGGATGAACAGTTTTCATCGGATGGTGATGAAGACAATGATCAAGATGGGCCACTGGTGGGGGATAATCCACATAATCCGATAGATTTGTCTAGTGGTAGCAGTTTATCATTGGAAGTTGATGAACACATTAACGCGTCAAATGAATTGGCTGATCCTAGATATGCTCCAGAGGTTTCTTATGAAAAGAAGATCAAAGCTTCGAATGTCGGACAACCTAGATTGTATTTAGCTTCAAAATTTGCTGTGTATCTTAAACCATCTGGAGATGGTTCGATTTGGACGATCACTGGTCCAGATTCCAATGTTGAGAAGAATGTGTTCTTTTTTCACTTACTGAATAGTGGAGGAAGAGGTACAGAATGA 2550 0.3863 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCEKIQVTVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTIVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVVGEEKEYAKEGKFVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVNGTHPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFSAIQGIVEDGGWWYSAYVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASLICGDTYPPIFQVLIGKKLLLKVDIKGVPHDTFYGTFRVRRICDDSTIIAMFELPDYDANDESTPKKEHDLHKSVPCGKGDVGIKKEFSDSFIKSEKDAGEYSGILCKSPILIDFLAGKQPAISGGTEFVALDDGEHGKEEKTPSNDTVSDDLSAKLDILLSSAEKETQEVLSHVVDASLQYGEKLIHENHVVTSKGKRNLNPQFEEAAVDVDGRGFKVAKGDRALPSSFVSTHGEGLGPIFYVIDELDNCLSLEVIRKNDQLLITENSFELIRTFYLIDRPASVQFRYVGFEIFFISLFDKDNQPIQVHLDPDCYVPELIDPETLDNVSRVFHIKYTRMEEDSSADVIVLSVSEPSDEQFSSDGDEDNDQDGPLVGDNPHNPIDLSSGSSLSLEVDEHINASNELADPRYAPEVSYEKKIKASNVGQPRLYLASKFAVYLKPSGDGSIWTITGPDSNVEKNVFFFHLLNSGGRGTE 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00428 849 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Aip08g00428 849 CDD RPA1_DBD_A_like 19 107 - -
Aip08g00428 849 Gene3D - 114 242 IPR012340 -
Aip08g00428 849 SUPERFAMILY Nucleic acid-binding proteins 266 417 IPR012340 -
Aip08g00428 849 Pfam Replication factor-A C terminal domain 288 368 IPR013955 -
Aip08g00428 849 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Aip08g00428 849 CDD RPA1_DBD_C 269 412 IPR013955 -
Aip08g00428 849 MobiDBLite consensus disorder prediction 729 760 - -
Aip08g00428 849 PANTHER REPLICATION FACTOR A 1, RFA1 22 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g00428 849 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 364 - -
Aip08g00428 849 CDD RPA1_DBD_B_like 140 235 - -
Aip08g00428 849 Gene3D - 4 112 IPR012340 -
Aip08g00428 849 SUPERFAMILY Nucleic acid-binding proteins 120 234 IPR012340 -
Aip08g00428 849 Gene3D - 258 422 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00428 Aip-Chr8 3273447 3278563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00428 11 363 Core DNA Replication Machinery Family AT5G08020 22.546 5.14e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00428 - - adu:107471135 994.571