Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00424 ATGGAGGACGACAATAAGGCGGGAACAGCTGAGAGCCTCATCGATTTGGTCAATCAAATATCTTCCATCTCCGATTACAGGCCAACGGTCAAGAAGGAGTACTGCAACTTGGCCAGGAGGCTCAAGCTCCTCACACCATTGTTCGAAGAGATTAGGGACAGTAAGGACCCTCTCCCTCAACAAACTTCAAATGCTTTGCTTCAGCTTAAGGAAGCCATGGAATCCGCCATGGACCTCCTCAGATTCGGTAGTGAAGGCAGCAAGATTTACATGGTCATTGAGAGGGACCAAATTATTAATAAATTCCACGAGGTGACTACTCAGTTGGAACAAGCATTGGCTGGAATTTCCTATGATAAGCTTGACATTTCAGATGAAGTTACGGAACAGGTTGAGCTTGTTCTTGCACAATTTAGAAGAGCCAAAGGAAGGGTTGATCCAGCTGATGCCGAGTTGCATGAGGATCTCTTGTCCCTTTACAACAAGAGCAATGATGCAGCTACAGATCAAGCTGTTCTACGGAGATTAGCCGAAAAATTGCAACTGATTGGAATAGCTGATCTCACACAAGAGTCGCTAGCTTTGCACGAGATGGTGATCGCGAGTGATGGGGATCCAGGGGCAAGCATTGAGAAGATGTCAATGTTGCTGAAGAGAATAAAGGATTTTGTACTAACAGAGAATCTAGACAAGGATGATAATGTAGGAGGAAACAGCCTTTCTTCAAGTTGCTGCAAACAAGGGACAAATGAAAAGAATCATCAGCCCCCTGTAATCCCTGATGATTTTCGATGCCCAATTTCTCTCGAATTGATGCAGGATCCTGTCATAGTATCAACAGGACAGACTTATGAGCGTTCCTGTATAGAGAAATGGTTGGAAGCAGGACATGGTACATGCCCGAAAACACAGCAGACCTTATCTAGTACTGTTCTCACACCAAACTATGTCTTAAGGAGCCTCATAGCACAATGGTGTGAAGCCAATGGCGTAGAGCCACCAAAGAGACCTAGCAGTTCTCGAACTGATAAATCAGCCTCTGCCTGCTCACCGGCCGAGCGGAGCAAGATTGAAAATCTTCTTAGGAAGCTCACATCTGGCAATCCTGAAGACCAGAGATCGGCTGCTGGCGAGATTCGCCTTCTTGCAAAGCGCAATGCAGATAATCGCGTGGCCATTGCGGAAGCTGGTGCAATACCTCTTCTTGTTGGTCTTCTCTGTACACCTGATTCCCGCATTCAAGAGCATGCTGTTACTGCACTTCTGAATCTTTCCATATGTGAAAACAACAAAGGAAGTATTGTGTCTTCAGGGGCAGTACCGGGGATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAACGCTGCAGCCACACTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTACAATCGGTTCTTCAGGGGCCATTCCACCATTAGTTACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAAGGGAACAAGGGAAAGGCAGTAAGGGCTGGAGTCGTTCCCACTCTTATGCGACTGCTGACAGAACGTGGCGGGGGAATGGTGGACGAAGCATTAGCCATTTTGGCAATATTAGCTAGCCATCCTGACGGAAAGGCCGCCATTGGCGCTGCCGAGGCGGTGCCTGTATTGGTTGAGGTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCTGTATTGGTGCACCTTTGCAATGGAGATCAACAATACATAGCTCAGGCACAGGAGTTAGGTGTGATGGGTCCATTGTTGGAATTGGCTCAACATGGCACAGACAGAGGGAAAAGAAAGGCAGCACAATTGTTAGAGCGTATGAGCAGGTTCCTTGAGCAGCAACATGAGGATGAGGAATTTCAAACACAAACTGAACTATTGCCTTCTATTAATACTACTACTACTAACCTTGATGATAGCTGA 1992 0.4644 MEDDNKAGTAESLIDLVNQISSISDYRPTVKKEYCNLARRLKLLTPLFEEIRDSKDPLPQQTSNALLQLKEAMESAMDLLRFGSEGSKIYMVIERDQIINKFHEVTTQLEQALAGISYDKLDISDEVTEQVELVLAQFRRAKGRVDPADAELHEDLLSLYNKSNDAATDQAVLRRLAEKLQLIGIADLTQESLALHEMVIASDGDPGASIEKMSMLLKRIKDFVLTENLDKDDNVGGNSLSSSCCKQGTNEKNHQPPVIPDDFRCPISLELMQDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTVLTPNYVLRSLIAQWCEANGVEPPKRPSSSRTDKSASACSPAERSKIENLLRKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCTPDSRIQEHAVTALLNLSICENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTERGGGMVDEALAILAILASHPDGKAAIGAAEAVPVLVEVIGNGSPRNKENAAAVLVHLCNGDQQYIAQAQELGVMGPLLELAQHGTDRGKRKAAQLLERMSRFLEQQHEDEEFQTQTELLPSINTTTTNLDDS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00424 663 Gene3D - 348 536 IPR011989 -
Aip08g00424 663 SUPERFAMILY RING/U-box 249 335 - -
Aip08g00424 663 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Aip08g00424 663 MobiDBLite consensus disorder prediction 331 353 - -
Aip08g00424 663 SUPERFAMILY ARM repeat 357 639 IPR016024 -
Aip08g00424 663 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Aip08g00424 663 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Aip08g00424 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Aip08g00424 663 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 646 - -
Aip08g00424 663 SMART arm_5 509 549 IPR000225 GO:0005515
Aip08g00424 663 SMART arm_5 386 426 IPR000225 GO:0005515
Aip08g00424 663 SMART arm_5 468 508 IPR000225 GO:0005515
Aip08g00424 663 SMART arm_5 427 467 IPR000225 GO:0005515
Aip08g00424 663 SMART arm_5 550 590 IPR000225 GO:0005515
Aip08g00424 663 SMART arm_5 592 632 IPR000225 GO:0005515
Aip08g00424 663 CDD RING-Ubox_PUB 263 305 IPR045210 -
Aip08g00424 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Aip08g00424 663 Gene3D - 538 662 IPR011989 -
Aip08g00424 663 PANTHER U BOX DOMAIN-CONTAINING 7 646 - -
Aip08g00424 663 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Aip08g00424 663 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Aip08g00424 663 Gene3D - 8 119 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00424 Aip-Chr8 3246889 3250656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00424 3 663 U-box Gene Family AT3G46510 70.270 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00424 - - pvy:116146246 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00424 08 3246889 3250656 Aip08g00424 08 3246889 3250656 ECH