Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00408 ATGGCTGATCCAAGCCATGGTGGAAATCCGGCCACCGATTTCACAACTAATAGGGATGAAAATCCAGCTCCCTTTGATGAGAGTGATTTCTCTGCTGCAGCCCTAAAGTACATAGATGAAATGCTTATGGAAGAAGACATTGATGAAGAGTACAACATGTTCCAACATTCCTCGGCTCTCCTAACAGCTGAGAAATCACTTTATGATGCCATTGGCCAGAGGTATCCTTCTTCTGCCTCTACTTTGTCGTCTTCAACTTCTTCTTCTATCCAGCATCATAATTACTACCCCAATGTGGAGAGCCCTGGGGATAGTTATAGCAGTATTAGTTCTGGCAGCACTTGTGGCACCACCAATACTAGCAGCTCTGCTGACTACTTCTGGAGCGGTTTTGATCTTTCTATGATTCCATTGATGCCAAACACTTTACCTTTTCCTGATACCTTTAATTTTCAGTCCAATCCATCCTCCACCACCCCCCAATCTAACCACAGAAGCGACTTCACTGCCACAAACAATAGTAGTGGATTAGGACAGGTGGTGATTAAGACTGAAGAAGTCGATTATGATTTCGAGGAAGAGGAAGAGGAAGAGGAAGAGGTCCAATTTCTTGCTGAGTCCATGGGAAGCAGTAGCAAGCAATCAGCATTGTACATGGATGACACTGAGCTATCCGAATTTTTTGATAAGGTACTTCTTGGAGCTGGATTGGGAAGAGGATCATCACAAGCTGATGAAGGCGTTCCCAAAGACTCTCGCGGTAAGAAGAGCCGTGCAAGGAAAAGAAATGACAAAAATGACGATGAAGTTATTGATCTGAGGTCATTGTTGATGCAATGTGCACAAGCAGTTTCTTCTGATAACCGTCCAATGGCAAAAGAGTTATTGATGCAGATTAAGCTGCATTCTTCTCCAACAGGTGATGCAACTCAGAGATTGTCCCATTACTTTGTAAATGCTCTCGAAGCACGCATGTCAGGGACAGGTACACACATTCATAGTGCCTTATCCACAAAAAGGCCCTCTGCTTCTGATATGGTCAAGGCCTACCAAATGTATGCATCAGCTTGTCCATTTGACAAGTTTGGAATCAGGTTCTCAATCAACTCAATTGACAATTCGGCCATGGAAGGTGTCCAAACTCTTCACATTGTCGAATTTGGCATCCGCTATGGCTTCAAGTGGCCTGGACTTATATATCGCCTATCCAGACTCCCCAGTGGGCCTCCAAAGCTTCGCATAACCGGGATAGAGTATCCACTGCCTGGTTTGAAGCTTGAGCAAACAGGGCAATGCTTAGCAAGGTATTGCGAGCGATTCAACGTCCCTTTCGAGTTCAATGCTGTTGTTGCAAAGAAATGGGAGAGAATCAAAGTTGAGGATCTCAAGATAAGGGAGAATGAGTTTGTAGCTGTGAATTGCATGTTTAGATTTGAGAATCTGCATGATGAGACAGTTGTGTTGGAGAATCCTAGAGATTCTGTTTTGGAGTTAATAAGGAAGGCTAATCCAAACGTATTTGTACATGGCATTATAAATGGTAACTATGATGCTGCATTCTTCGTGACAAGGTTTAAGGAGGCAATGTTTCATTACTCAGCAATGTTTGACATGCTTGATAACACTGTTGCCCGTGATGATCCTATAAGGTTGATGTATGAGGAAGCTATATTTGGGAAGGAAGTGATGAATGTTGTGGCTTGTGAAGGGAATGAGAGGATTGAGAGACCACACAATTACAAGAAATGGCAGGTAAGGAACACAAGAGCAGGGTTCAGGCAGCTTTCATTGGATGAACAAATGATTGAGAAGTTTAAGGATATGTTGAGAAATGAAGGTTATCATAAAGATTTCATGCTTCATGCTGATGGCAAATGGCTTCTACAAGGTTGGAAGGGCAGAATCCTATATGCTTCTTCTTGTTGGGTACCAGCATAG 1938 0.4309 MADPSHGGNPATDFTTNRDENPAPFDESDFSAAALKYIDEMLMEEDIDEEYNMFQHSSALLTAEKSLYDAIGQRYPSSASTLSSSTSSSIQHHNYYPNVESPGDSYSSISSGSTCGTTNTSSSADYFWSGFDLSMIPLMPNTLPFPDTFNFQSNPSSTTPQSNHRSDFTATNNSSGLGQVVIKTEEVDYDFEEEEEEEEEVQFLAESMGSSSKQSALYMDDTELSEFFDKVLLGAGLGRGSSQADEGVPKDSRGKKSRARKRNDKNDDEVIDLRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHYFVNALEARMSGTGTHIHSALSTKRPSASDMVKAYQMYASACPFDKFGIRFSINSIDNSAMEGVQTLHIVEFGIRYGFKWPGLIYRLSRLPSGPPKLRITGIEYPLPGLKLEQTGQCLARYCERFNVPFEFNAVVAKKWERIKVEDLKIRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNVFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKEVMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGYHKDFMLHADGKWLLQGWKGRILYASSCWVPA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00408 645 ProSiteProfiles GRAS family profile. 264 643 IPR005202 -
Aip08g00408 645 Pfam GRAS domain family 273 642 IPR005202 -
Aip08g00408 645 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 88 IPR005202 -
Aip08g00408 645 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 183 644 IPR005202 -
Aip08g00408 645 MobiDBLite consensus disorder prediction 1 27 - -
Aip08g00408 645 PANTHER SCARECROW-LIKE PROTEIN 14 183 644 - -
Aip08g00408 645 PANTHER SCARECROW-LIKE PROTEIN 14 21 88 - -
Aip08g00408 645 MobiDBLite consensus disorder prediction 238 266 - -
Aip08g00408 645 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00408 Aip-Chr8 3125469 3127430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00408 27 644 GRAS Transcription Factor Family AT2G29060 44.113 6.84e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip08g00408 GRAS 4.2e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00408 - - aip:107614541 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00408 08 3125469 3127430 Aip08g00408 08 3125469 3127430 ECH
Aip04g01828 04 80711104 80714445 Aip08g00408 08 3125469 3127430 ECH
Aip08g00408 08 3125469 3127430 Aip03g00489 03 4733187 4736497 PCT
Aip03g00490 03 4738364 4741855 Aip08g00408 08 3125469 3127430 PCT