Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00407 ATGGATCCAAACCGCGTTAGGAACACCGATTACATAAACGCCTACGGATTCGGCGACTATGGTGGTGCTTTGCTTTCAGATTTCAACGATTGGGATCTACACAGACAATACAATCACCCTTTCGATTTAACTCCAAGTAATGCTTTTGATCGGTTTGACGCCGACACATTTGGCTTGCATGCACATGCGGTTTCGAATTCCGGAAGCTCGGAGCCGTTTGTTCCACCCTCTTCCGCGAGCCGTGTGGAAAAATCCATGCCGGGTTCAGCTTTTGGGGCTGTGGCTTCTATGCCGGATCCTTCCGTGGAAGACACGGACTTTTCTGAAACGGTGAGGTACATAAGCCAGATTTTGTTGGAAGAGAATTTTGAGGATAAGCCTTGCATGTGCTATAATCCTCTTAGCCTGCAAGATACTGAGAAATCGTTCTATGATGCCCTCAATCAAGAATTTCCCCTTTCCCCTAATGAGCACCCTCTTGATATTCATCAGAATCTGGAGAGTCCTGATGGTGTTAGTGCTGGAAGCTTCCCCACTGGTTCTTCTGGAGGTTGCAGCAATAGCAACAGCAGTAGCACTAGCACTAGCAGTAGTGAGAACCATTTAAGTTCTCATGACTTCAAGACCCTTTCTCCAGATACTCCTGTTTCCGGTGATAGTTCTTTGCAGTTTGATTCTCATTCGCATTTGATTTCGCATGTGCCTTCTCAGCTTCACCTTCCTCAACATGCTTTGACTAGTATTGGTGATGGGGTGTTTGATTTGGATCCTTCTGCAACGAAGCTCTTGGCTCAGAATATCTTTAGTAATGCTGACTCTATCTTGCAGTTCAAAAGAGGGTTGGAGGAAGCCAGTAAATTTCTTCCCCCTGGGCCAAGGCTTTCCACTGGCCTGGAGAGCAGTAGCATGCATGCAGAAGAGTCAAAGAGAAGGGTGGAGAAGGCTGCAGTGCCAGTGATGGTGGAGAATGATGCTAAGGAGAGATCAAACAGAGTTGTTGCTGGGCCATATCACATAGTTCCAGCAACAACAAAAGCTGCAAAAAATACAGCAGCGAGGAGTCTGGATGGGGTGAAGAGTAGGAAGCATCATGCTCGCCAGGGCGATGATGGTGAAGAAGAAAGATGCAACAAGCAATCTGCGGTTAGTGTTGAGGAAGAAAATGAAATATCTGAAATGTTTGACAAGGTGCTGCTTAGTGTTGAAAATGTCCCACTGTCTGCTGAACAGCAGGGTGGATTGGTTGTGGATACACAACTAATTGAACAACCACATTCATCCGAGGGAGGGAGGAGTCGATCCAAGAAAAAAGGCAGGAAGAAAGAAACTGTGGATTTGAGAACTCTTTTGGTTCTGTGTGCCCAAGCTGTGTCTGCCAATGACCAAAGGACTGCTAATGAACTACTAAAGCAGATCAGACAGCATTCCTTGCCCTTCGGCGATGCATATCAGAGGCTGGCTCGTTACTTTGCCGATGGCCTGGAGGCACGCATGGCTGGCACTGGCCCTGGAATTCATATATTCTATGCCTCTCTCAGCTACAAGAAGTTCAGTGCTGCTGATTTTCTCAAGGCCTACCAAGTTTTTATATCTGCTTGCCCTTTCAAGAAATTTGCACATTTCTTTTCAAATAAGATGATTTTGAACATAGCTGAAAAGGCAGAAACTCTTCATATTGTTGATTTCGGTATCCTGTATGGTTTCCAGTGGCCAATACTTATCAAATTTCTAGCCAAGAGAGATGGAGGGCCTCCCAAGCTGCGGATCACAGGAATTGAGTATCCCCAAGCTGGATTTCGTCCCACAGAAAGAATTGAGGAGAGTGGACGTCGTCTAGCTAAATATTGCAAGCTTTTCAATGTTCCCTTTGAGTACAAAGCCATAGCATCAAGACACTGGGAAACCATTCAGATTGAAGACCTTAACATCAAGGACAATGAGGTAGTTGCTGTGAACTGTCTGGTAAGGTTCAAGAATTTACTCGAGGAGACGGTTGAAGTGAACAGTCCTAGAAATGCAGTTTTGAATTTAATCAGGAGGATAAACCCAGCTATTTTTGCTCACACAGTCGTAAATGGTTCTTATAATGCCCCTTTCTTCCTCACACGCTTTCGGGAAGCACTGTTCCATTATTCTGCAATTTACGATATGTTTGATACTCTCATACCCCGAAACAATGCATGGAGGTCGATGCTTGAGAGAGAGTTTTTGGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGGTCTAGAAAGGGTTGAGAGGCCTGAAACATACAAGCAGTGGCAGGCTAGGAATTCAAGAGCTGGTTTTAGGCAGCTACCACTGGATAAGGCGTTAATGTCCAAATTTAGGAGCAAGTTAAAGGAATGGTACCAACACCACAAAGATTTTGTTTTTGATGAAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCCGGATTTTGTATGCCTCCTCCTGTTGGGTGCCAGCATGA 2478 0.4528 MDPNRVRNTDYINAYGFGDYGGALLSDFNDWDLHRQYNHPFDLTPSNAFDRFDADTFGLHAHAVSNSGSSEPFVPPSSASRVEKSMPGSAFGAVASMPDPSVEDTDFSETVRYISQILLEENFEDKPCMCYNPLSLQDTEKSFYDALNQEFPLSPNEHPLDIHQNLESPDGVSAGSFPTGSSGGCSNSNSSSTSTSSSENHLSSHDFKTLSPDTPVSGDSSLQFDSHSHLISHVPSQLHLPQHALTSIGDGVFDLDPSATKLLAQNIFSNADSILQFKRGLEEASKFLPPGPRLSTGLESSSMHAEESKRRVEKAAVPVMVENDAKERSNRVVAGPYHIVPATTKAAKNTAARSLDGVKSRKHHARQGDDGEEERCNKQSAVSVEEENEISEMFDKVLLSVENVPLSAEQQGGLVVDTQLIEQPHSSEGGRSRSKKKGRKKETVDLRTLLVLCAQAVSANDQRTANELLKQIRQHSLPFGDAYQRLARYFADGLEARMAGTGPGIHIFYASLSYKKFSAADFLKAYQVFISACPFKKFAHFFSNKMILNIAEKAETLHIVDFGILYGFQWPILIKFLAKRDGGPPKLRITGIEYPQAGFRPTERIEESGRRLAKYCKLFNVPFEYKAIASRHWETIQIEDLNIKDNEVVAVNCLVRFKNLLEETVEVNSPRNAVLNLIRRINPAIFAHTVVNGSYNAPFFLTRFREALFHYSAIYDMFDTLIPRNNAWRSMLEREFLGREIMNVVACEGLERVERPETYKQWQARNSRAGFRQLPLDKALMSKFRSKLKEWYQHHKDFVFDEDNNWMLQGWKGRILYASSCWVPA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00407 825 MobiDBLite consensus disorder prediction 169 221 - -
Aip08g00407 825 Pfam GRAS domain family 446 822 IPR005202 -
Aip08g00407 825 PANTHER SCARECROW-LIKE PROTEIN 34 73 824 - -
Aip08g00407 825 MobiDBLite consensus disorder prediction 355 382 - -
Aip08g00407 825 MobiDBLite consensus disorder prediction 288 311 - -
Aip08g00407 825 MobiDBLite consensus disorder prediction 421 441 - -
Aip08g00407 825 MobiDBLite consensus disorder prediction 346 384 - -
Aip08g00407 825 MobiDBLite consensus disorder prediction 154 221 - -
Aip08g00407 825 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 73 824 IPR005202 -
Aip08g00407 825 ProSiteProfiles GRAS family profile. 437 823 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00407 Aip-Chr8 3108041 3111305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00407 110 825 GRAS Transcription Factor Family AT1G07530 47.730 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip08g00407 GRAS 1.5e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00407 - - aip:107612146 1605.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00407 08 3108041 3111305 Aip08g00407 08 3108041 3111305 ECH
Aip08g00407 08 3108041 3111305 Aip03g00489 03 4733187 4736497 ECH
Aip08g00407 08 3108041 3111305 Aip03g00490 03 4738364 4741855 PCT
Aip03g00491 03 4764737 4767314 Aip08g00407 08 3108041 3111305 PCT