Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00405 ATGAATGGTTTTCACTGTGAGAGTTCATCATATTCACCTGGAACCAGTTCAAGTGAAGATTCTGCTGAGTATAATAAATATTCCAACCCCATCCTCAGATACATAAGTGACATCCTCATGGAGGAGGAAGATGACTTGGAGAACAAACCCTGTATGTTGCAGCAGTGTTTGAAGCTCCAAGCTGCTGAAAAATCATTCTCTGAAGTGCTTGGAAATTCATCAAATTCTGTACCCTCTCAAGGCTGTGATGAAAACAACCGAGATGGTGATTATGGTCGGACCACCAGCTTCGAGAGCTATAGCAGCTGCACCACTGATAATAACTCTTATGAGTCTGATTGGGTCAATCTTGTTGGTGAATATGAATCTTCTTTGCTACAAGCCCCTGATAATGACTCTTATGAGTCAGATTGGCTCAATCTTCTTGACTCCCCAAATGATGGATCTTCTGAAATTCACTACCAGAACATGGTACTACTGACAAACAATGAAGAGGGATCTCGATCTGGAACAACAGGAACAAGGGAAAAGAGAAGTATTCAGGTTGATGATGATACTTCTTATGAACAAGGTCGAAGAGGAAGCAAGATCTCAGCTGTTTTCTCTGATGAGTCAGAGCCACCAGAGATTCTTGATGAAGTGCTGCGTGTTCAGATTGGAAGAAGTCAATGTTTATCTGGTGTTGAACCCTTACCAGAGAATGAGATGCTGAAGAGGCAGAATGTTGACTCAGTTGGATCCAGTGGAAAGACGGCAAGATCGAAGAAAGGAAGCAGCAGAAATAGCAACACAGGTGCCACTGTGGATTTATGGAGTCTGCTAACTCAGTGTGCACAAGCAGTGGCAAACTATGATCAGAGGAATGCATATGATACACTCAAGCAGATTAGGCAACATTCTTCACCAGCTGGGGATGGAATGCAGCGTATGGCGCATTACTTCGCCATTGGCCTTGAGACACGGTTGAATGCCGGAACACCTTCATATCTTCCCCTTGATATGGCATCTGCTGCTGATATGTTGAAAGCTCACAAACTATATGTGACAGCTTCTCCTTTGCAGAGGATGACAAATACATTTGCAACCCAAACAATCATGAACCTAGTACAGAATGAAAGCTGTGTTCACATTATTGACTTTGGAATTTGCTATGGTTTCCAGTGGCCCTGCCTTATCAAGCGTCTGTCGCAGAGAAATGCGCCTATAAAGCTTCGTATAACCGGAATTGATCTTCCTCAGCCGGGTTTCCGGCCGGCAGAAAGGCTCGAGGAGACTGGTAGACGCCTGGAGAATTACTGTAAGAGGCACAATGTGCCTTTCGAATACAACTGCATTGCACAGAAATGGGAAACAATCAGGCTTGAGGATCTTAAAATAGACAGGAATGAAGTGACAGTGGTTAACTGCTTTTACAGGCTGAAAAACCTGCCGGATGAAACTGTGTTAGTAAACAGTCCAAGAGATGCAGTGTTGAAGCTGATCAGGAGCATTAATCCAAACATCTTCCTGCATGGGGTAGTCAATGGCTCTTATAGCGCGCCGTTTTTCCTGACACGGTTCAGGGAGGCGCTCTTCCACTTCTCGTCACAATTTGATATGTTTGAGGCTAATGTCCCCCGCGAAGATGTAGAAAGGATGATACTTGAGAAAGGGTTGATTGGAAGGGATGCTATCAATGTGATAGCTTGTGAGGGAGCAGAGAGAGTTGAAAGGCCAGAGACCTACAAGCAATGGCAGATTAGGAACAAGAGAGCAGGCTTCAAGCAAATTCGGGTGGATCAGGAATTGGTGAATGAAATCAAGGGAATGTTGAAGAAAGAGTATCATAGAGATTTTGTGGTTGACCAGGATGGCAAGTGGGTTTTGCAGGGCTGGAAAGGCCGTATTCTTCATGCTCTCTCTGCTTGGGTTCCTGCTTAA 1920 0.4443 MNGFHCESSSYSPGTSSSEDSAEYNKYSNPILRYISDILMEEEDDLENKPCMLQQCLKLQAAEKSFSEVLGNSSNSVPSQGCDENNRDGDYGRTTSFESYSSCTTDNNSYESDWVNLVGEYESSLLQAPDNDSYESDWLNLLDSPNDGSSEIHYQNMVLLTNNEEGSRSGTTGTREKRSIQVDDDTSYEQGRRGSKISAVFSDESEPPEILDEVLRVQIGRSQCLSGVEPLPENEMLKRQNVDSVGSSGKTARSKKGSSRNSNTGATVDLWSLLTQCAQAVANYDQRNAYDTLKQIRQHSSPAGDGMQRMAHYFAIGLETRLNAGTPSYLPLDMASAADMLKAHKLYVTASPLQRMTNTFATQTIMNLVQNESCVHIIDFGICYGFQWPCLIKRLSQRNAPIKLRITGIDLPQPGFRPAERLEETGRRLENYCKRHNVPFEYNCIAQKWETIRLEDLKIDRNEVTVVNCFYRLKNLPDETVLVNSPRDAVLKLIRSINPNIFLHGVVNGSYSAPFFLTRFREALFHFSSQFDMFEANVPREDVERMILEKGLIGRDAINVIACEGAERVERPETYKQWQIRNKRAGFKQIRVDQELVNEIKGMLKKEYHRDFVVDQDGKWVLQGWKGRILHALSAWVPA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00405 639 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 2 638 - -
Aip08g00405 639 MobiDBLite consensus disorder prediction 240 263 - -
Aip08g00405 639 MobiDBLite consensus disorder prediction 177 191 - -
Aip08g00405 639 ProSiteProfiles GRAS family profile. 261 637 IPR005202 -
Aip08g00405 639 MobiDBLite consensus disorder prediction 162 205 - -
Aip08g00405 639 MobiDBLite consensus disorder prediction 162 176 - -
Aip08g00405 639 MobiDBLite consensus disorder prediction 70 93 - -
Aip08g00405 639 MobiDBLite consensus disorder prediction 230 263 - -
Aip08g00405 639 MobiDBLite consensus disorder prediction 1 23 - -
Aip08g00405 639 Pfam GRAS domain family 272 636 IPR005202 -
Aip08g00405 639 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 638 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00405 Aip-Chr8 3095866 3098341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00405 31 71 GRAS Transcription Factor Family AT1G07530 60.976 9.16e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip08g00405 GRAS 8.4e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00405 - - aip:107612146 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00405 08 3095866 3098341 Aip08g00405 08 3095866 3098341 ECH
Aip08g00405 08 3095866 3098341 Aip03g00490 03 4738364 4741855 ECH