Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00396 ATGTACATAAACCGCGACCCTTTTCGCTTCCCCATCTCCATCTGCTTGCTCTGCATCACCATGCATCACTATATCCCTGACATTAGTCCCATTGCATTACTTGATTCTCCCATTATGCCCCCAATTCTCAGTTCTCTGCCACTTGATCAAGGAAATTTCAATGATACTCCTGATTCTTCCCTCAAGTTTAAGAACAATGCTACCCTTGCCGATCCTAATCCTTTGTCTCCTTACTCTACCTCTCGGAGGATGGTTATAATTGGAGAAAAAATTATCTATAAGGGTACTCATAACCATTCAAAACCACATCTTGGTCGTCGAGCGTCAGGACTTTCCACTGATGAGATGTCAGACATGGGTGAAGCACTGAAACTGGTGAAAATTATGCTAAAGTTAAAGCAACGGAACATCCTTTCAACTGCTTCTCTTTGTTTTTTCGTAGCTAGGGGAGATATTGAAAGTGGTTTTCCAGATTATGTTCCTGAAAGATCCTTAATGCGTATTCATCCGGCTCGACCAATTAGTAGCAATTCTCTGGCTTTTCTTACCACAGTTATTGTGTTATTCATGCTGCTGAACTCTCCTCAGATGGCACATTATTTTATGTTATGGCTTGTGCTTGCTGTTTTTGCGATGGCTACAAGCTTGAGGATGTACACAGCTTGTCAGCATCTTCAAGCTCAGGCCAGGGCTCATGCAGCAGCAGCAACTGGATTGCTTAGCCAGACCGAATTATGGCTTCATGTGCCACCATCCATAGCAATTGCAACTAGAGGACAATTGCAGGGGCTTAGGCTTCAGCTTGCACTACTTGATCGTGAATTCGATGAACTAGGGGTAGATTATGATGCTTTGAGAGCTCTTGACTCTGATACTGCTTCGACTACTACTTCCATGACTGAGGAAGAGATAAACGCCTTACCTGTTCACAACTATAAAGTTGCAGTTCCAACAAAGGATTGCTCAGCAGGGTTGGGATCCTCTTCGGGTGCTGCTGAGAATAAGCAAGCCTGCGAAGGAGCCGAGGGAAATAACCAAGGCCCGGAAGATGAGCTAACATGTACCATATGCTTGGACCAAGTTAACCGTGGCGAACTAGTCCGTAGCCTGCCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTCCGGCAGCGAGGAACATGTCCGGTGTGCAAATTTAAGATGGGTTCGGAATGGCGAGGAAACAGGGAGACCGAGACTGATTCCGACGGTTCAGATATTGCTTAG 1257 0.4535 MYINRDPFRFPISICLLCITMHHYIPDISPIALLDSPIMPPILSSLPLDQGNFNDTPDSSLKFKNNATLADPNPLSPYSTSRRMVIIGEKIIYKGTHNHSKPHLGRRASGLSTDEMSDMGEALKLVKIMLKLKQRNILSTASLCFFVARGDIESGFPDYVPERSLMRIHPARPISSNSLAFLTTVIVLFMLLNSPQMAHYFMLWLVLAVFAMATSLRMYTACQHLQAQARAHAAAATGLLSQTELWLHVPPSIAIATRGQLQGLRLQLALLDREFDELGVDYDALRALDSDTASTTTSMTEEEINALPVHNYKVAVPTKDCSAGLGSSSGAAENKQACEGAEGNNQGPEDELTCTICLDQVNRGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFKMGSEWRGNRETETDSDGSDIA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00396 418 CDD RING-H2_PA-TM-RING 353 395 - -
Aip08g00396 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 401 IPR013083 -
Aip08g00396 418 ProSiteProfiles Zinc finger RING-type profile. 354 395 IPR001841 -
Aip08g00396 418 PANTHER TARGET OF ERK KINASE MPK-1 142 416 - -
Aip08g00396 418 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 142 416 - -
Aip08g00396 418 SUPERFAMILY RING/U-box 349 399 - -
Aip08g00396 418 SMART ring_2 354 394 IPR001841 -
Aip08g00396 418 Pfam Ring finger domain 353 395 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00396 Aip-Chr8 3045215 3051502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00396 142 418 C3H Transcription Factor Family AT3G55530 64.158 1.28e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00396 K16283 - gmx:100805406 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00396 08 3045215 3051502 Aip08g00396 08 3045215 3051502 ECH