Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00395 ATGAACTCGGATATAACTCACGCCACGACGGCGTCGTATTGGTGCTACAGCTGTACACGTTTCGTTCACCTTCTCGACCGACACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTTGAAGAGATCCATGCCGGCCAGTCCCCTGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCATCTCGCCGCCAAGGCTTCCGCCGGAGGCGCCGAAACGCTGGCAGCCGCTCGCCGTTTAACCCGGTTATCGTTCTCCGTGGACCAGGGGAGGATGGCGCTGCCGGAGGCGATAACGAGGGTTCCACTTTCGAGTTGTACTATGACGACGGCGATGGTTCCGGTCTTCGTCCTCTGCCGCCGACGATGTCAGAGTTTTTGCTCGGATCTGGATTCGATAGGTTACTAGAGCAGTTCTCTCAGATCGAGATCAACGGATTTGGTCGGCCGGAGAATCCGCCGGCATCGAAGGCGGCGATAGAGTCAATGCCAACGGTTGAGATCGGAGGCTCTCACGTGGAGACGGAAACTTACTGCGCCGTGTGCAAGGAAGCCTTTGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGTAAACACCTTTACCACTCCGATTGCATCATGCCGTGGCTCACGATGCGGAATTCGTGCCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACGCGGCGGAAGGGAGAGTCGCCGGTCAGATCGATGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGCGGTTTCGCCGTCGGAAGATTCTCCGGCGGCCGAAGATCCGGAGAGAACCGTTTGCCCGTCGTGTATACCGAGATGGACGGCGGAGGCAGCGGTGGAAGCAATGGAGGAAACTCGAACGGTGGTTCTAGAAGAATATCCCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGCAATTTCTTTTCCTTCTTCGGGAGAATTGGATCTAGGTCACGTTCCTCTTCGTCTTCGTCATCGTCGTATTCAGGTTCTGAGCATGGATCAGATGACAAATCACCTTGTTCAATATGCACTGATTTGGATTCTATTGTTGGGGATAAAGTCTTGGCTTTAGATGATGATCATGATGCTTGTTTTGGGGAATTTGGGGCATGTTTGTTTGTTGGGTTCATCATGATGATGCTTCATATCATGCGTTTCATGAATTACTTCCTTCACCTTTTTGCATAA 1227 0.542 MNSDITHATTASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEEIHAGQSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDGAAGGDNEGSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVETETYCAVCKEAFELGAEAREMPCKHLYHSDCIMPWLTMRNSCPVCRHELPSDQNAAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGGSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSSSYSGSEHGSDDKSPCSICTDLDSIVGDKVLALDDDHDACFGEFGACLFVGFIMMMLHIMRFMNYFLHLFA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00395 408 Pfam Protein of unknown function (DUF1117) 242 346 IPR010543 -
Aip08g00395 408 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Aip08g00395 408 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Aip08g00395 408 MobiDBLite consensus disorder prediction 273 303 - -
Aip08g00395 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 311 - -
Aip08g00395 408 SMART ring_2 178 218 IPR001841 -
Aip08g00395 408 MobiDBLite consensus disorder prediction 67 95 - -
Aip08g00395 408 SUPERFAMILY RING/U-box 158 225 - -
Aip08g00395 408 MobiDBLite consensus disorder prediction 327 351 - -
Aip08g00395 408 MobiDBLite consensus disorder prediction 282 298 - -
Aip08g00395 408 PANTHER OS05G0110000 PROTEIN 8 311 - -
Aip08g00395 408 Pfam Ring finger domain 177 219 IPR001841 -
Aip08g00395 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 225 IPR013083 -
Aip08g00395 408 CDD RING-H2_RNF126_like 178 219 - -
Aip08g00395 408 MobiDBLite consensus disorder prediction 327 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00395 Aip-Chr8 3035358 3037001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00395 117 230 C3H Transcription Factor Family AT5G01980 43.860 1.07e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00395 - - aip:107612938 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00395 08 3035358 3037001 Aip08g00395 08 3035358 3037001 ECH
Aip08g00395 08 3035358 3037001 Aip03g00502 03 4862357 4864112 ECH
Aip08g00395 08 3035358 3037001 Aip03g00502 03 4862357 4864112 PCT