Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00378 ATGGGAAGTTGTTGCAGCAAACTCTGCATATGCTGGTGGCCCTGCTGCTGCAACAAAAGATCAAATCTTCAAGACTTACCCGAAAATGAAGATGGGAACAAGGGTGAGAAGAAGGGTCCTGCTAGCTCTAGCTTCACTGAGTTCAGCTTCGACCAACTGCAAACTGCCACGTCAGCATTCTCGCCCGACAACATTGTTTCTGAACACGGTGAGAAGGCTCCCAACGTTGTCTACAAAGGGAGGCTTGAAGATGATAAGCTTGTTGCTGTTAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAGTTCCTAGAGGAAGCACGGGCAGTGGGGCAGCTGAGGAGTGAGCGTTTGGCTAATTTGGTTGGGTGTTGCTGTGAAGGAGAAGAGAGGTTGCTTGTGGCAGAGTTTATGCCCCATGAAACTCTCTCCAAGCACCTCTTTCACTGGGAGTCCCAGCCCATGAAATGGGCAATGAGGCTGAGAGTTGCCTTGTATTTGGCACAAGCATTGGAATATTGCAGCAGTCAAGGAAGGGCATTATACCATGATCTTAATGCTTATAGAATTTTGTTCGATCAGGATGGCAACCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGCAAAAGTTATAGTACAAATTTAGCCTTCACCCCTCCAGAGTATTTAAGGACAGGAAGAATCATCCCAGAAAGTGTGATTTACAGTTTTGGTACACTTTTGCTTGATCTTCTTAGTGGCAAGCATATTCCACCAAGTCATGCACTTGACCTCATACGAGGGAAAAATTTTTCATTTCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAAATAGTGAGACTAGCTTCGCGTTGCTTACAGTATGAACCTCGAGAAAGACCAAATGCCAAGTCGCTTGTGACTGCTTTAACTCCTCTTCAGAAAGAAGCTTCAGTACCTTCGCAAGTTTTGATGGGCATACTGGAGGAGGGTGCATCATCAAAAGAAACAGTTTCATTGACACCTTTTGGTGAAGCATGTTCTAGAAGAGATCTCACTGCAATATATGAAATACTGGAAAAGGTTGAGTATAAGGATGACGAGGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAAATACAAGAAACCCTAAATGCTAAGAAGCATGGAGATTCTGCTTTTCGTGCCAAAGATTACCCTACAGCCATTGACTACTATACAAAGTTCATTGATGGTGGGACCATGGTATCGCCGACTGCTTATGCAAGGCGCTGCTTGTGTTACTTGATGAACAACATGCCTCAAGAAGCTCTTGGAGACGCCATGCAAGCTCAATCAATATCGCCGACCTGGCCAACTGCGTTCTATCTTCAAGCAGTGGCACTCTTCAGCCTTGGCATGGACAATGATGCGCAGGAAAGTCTTAAAGACGGCACAATGTTAGAATCCAGAAACCAGAGAAATTGA 1488 0.4469 MGSCCSKLCICWWPCCCNKRSNLQDLPENEDGNKGEKKGPASSSFTEFSFDQLQTATSAFSPDNIVSEHGEKAPNVVYKGRLEDDKLVAVKRFNKSAWPDSRQFLEEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPHETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSQGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFSFLMDSCLEGHFSNDDGTEIVRLASRCLQYEPRERPNAKSLVTALTPLQKEASVPSQVLMGILEEGASSKETVSLTPFGEACSRRDLTAIYEILEKVEYKDDEDVANELSFQMWTDQIQETLNAKKHGDSAFRAKDYPTAIDYYTKFIDGGTMVSPTAYARRCLCYLMNNMPQEALGDAMQAQSISPTWPTAFYLQAVALFSLGMDNDAQESLKDGTMLESRNQRN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00378 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 495 IPR045845 GO:0004672|GO:0009742
Aip08g00378 495 Pfam Protein tyrosine and serine/threonine kinase 76 314 IPR001245 GO:0004672|GO:0006468
Aip08g00378 495 ProSiteProfiles Protein kinase domain profile. 63 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00378 495 SUPERFAMILY Protein kinase-like (PK-like) 41 319 IPR011009 -
Aip08g00378 495 Gene3D Phosphorylase Kinase; domain 1 34 138 - -
Aip08g00378 495 SUPERFAMILY TPR-like 394 489 IPR011990 GO:0005515
Aip08g00378 495 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 495 - -
Aip08g00378 495 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
Aip08g00378 495 Gene3D Tetratricopeptide repeat domain 384 495 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00378 Aip-Chr8 2911109 2914707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00378 22 314 Glycoside Hydrolase AT3G07070 32.399 3.90e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Aip08g00378 PK_Tyr_Ser-Thr 2.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00378 - - gmx:732542 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00378 08 2911109 2914707 Aip08g00378 08 2911109 2914707 ECH