Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00372 ATGATGAGCAAAGACAACGACGAGGAGAAGAATAACAAGAGTAAGAATAAGCTAAGGAAGGGATTATGGTCACCAGAAGAAGATGAGAAGCTGATGAGGTACATGATGAACAATGGACAAGGTTGTTGGGGTGAAGTGGCTAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTCGCCTTCGATGGATTAATTACTTGAGACCCGATCTTAAGAGAGGTGCTTTCTCACCACAAGAACAGCAACTTATCATCCATTTACATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCGGCACAGTTACCGGGTCGAACAGACAATGAAATCAAGAATTTTTGGAATTCAACAATAAAGAAAAGGTGTATAACCATCACCTCATCATCAACCTCCCAAAACACGAGTGAGTCCTACTCATCATCATGGCTTGAACCACATGATCATAACAGCATGGAAGGATTTACAATGATGCCTATGTTCAGTTGTTCATCATCTCAATCACCATCAATCATTATCGATGAGCATTTGCCTATGCCGATGGAGAATAATAACATGCATGCAGCTATGGGAATCAACAATAATAATAATAATATGTTTGTTCCTCCTTTACTAGAGAGTGCTACTACGAGCAACGTTTATTTTGATAATAAGGTTGTTAACGTGGAGGAGGATTCATTAATAAGCATGGAAGATTGGGAGTTGGAGGACTTGATGATGATCAAAAGTGTTTCCTCCCCGTTTCTTGATTTTCCACTATCATGA 762 0.4003 MMSKDNDEEKNNKSKNKLRKGLWSPEEDEKLMRYMMNNGQGCWGEVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQQLIIHLHSLLGNRWSQIAAQLPGRTDNEIKNFWNSTIKKRCITITSSSTSQNTSESYSSSWLEPHDHNSMEGFTMMPMFSCSSSQSPSIIIDEHLPMPMENNNMHAAMGINNNNNNMFVPPLLESATTSNVYFDNKVVNVEEDSLISMEDWELEDLMMIKSVSSPFLDFPLS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00372 253 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Aip08g00372 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Aip08g00372 253 Gene3D - 74 143 - -
Aip08g00372 253 CDD SANT 75 115 IPR001005 -
Aip08g00372 253 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Aip08g00372 253 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Aip08g00372 253 SMART sant 19 69 IPR001005 -
Aip08g00372 253 SMART sant 72 120 IPR001005 -
Aip08g00372 253 Gene3D - 17 73 - -
Aip08g00372 253 PANTHER TRANSCRIPTION FACTOR MYB46 12 194 - -
Aip08g00372 253 PANTHER MYB DOMAIN PROTEIN 55 12 194 - -
Aip08g00372 253 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Aip08g00372 253 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Aip08g00372 253 CDD SANT 23 67 IPR001005 -
Aip08g00372 253 MobiDBLite consensus disorder prediction 1 22 - -
Aip08g00372 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00372 Aip-Chr8 2874216 2876593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00372 17 121 MYB Transcription Factor Family AT5G12870 86.667 3.72e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00372 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00372 K09422 - twl:119997755 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00372 08 2874216 2876593 Aip08g00372 08 2874216 2876593 ECH
Aip08g00372 08 2874216 2876593 Aip03g00571 03 5518925 5521704 ECH
Aip08g00372 08 2874216 2876593 Aip03g00571 03 5518925 5521704 PCT