Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00368 ATGGCTGCAACTCCAATCAAGTCACTTCAATCTCCCTCAAAGCCCAATCTCAGATCCCAATCCAATTACAAACCATCACCCGCCATTACTCCACTCACTCCCCAATCCCTGCCAACTCCACGCAGATCCACGCGCCAACGGTCCCTCCACTTCAACTCCACCGAACCTGCCAACTTTCGCCAATCCATTGATTACGCCGATGATTCCACCGAAGTGATAAAACGTAGAACTGGAACTGCGCGAAGTGCTTCGGTTGTTAAAGGTGGATCTGAAAAGAAGGCCGGTGAAGAAGTGAAGCAAAAAAATGCGAAAGCCAGGGATTTGGTTGAGATTCAGTTTGCTCCGGCATCGCCTGAGCAGTCGGAAACGAAGAAGAGGAAGATGGAGAGTGAGAGAAAGGTTGTTACCAGAGCCATGGCTGCAAAAAAGGGGAAATTAGAAAATGGAGATAAAGGTGGAAAAAAGAGTGGGAGGTTGACTAAGAGGCGCGTGTATTATAAGAAGGTGGTTTATGATGGAGGCGAGTTTGGAGTTGGTGATGATGTTTATGTGAAGAGGAGGGAAGATGCTAGCTCCGATGATGAAGATCCTGAAGCGGAGGAGTGCAGGCTTTGCTTTGATTCTGGAAGTGAGGTAATGATTGAGTGTGATGATTGTTTAGGTGGGTTTCACTTGAAGTGCTTGACGCCTCCATTGAAAGAGGTTCCTGAAGGGGATTGGGTATGTGGTTTCTGTGAGGATCGTAAGATGGGTAGGAAAGCTAGCTTTCCAAAGCCGCCAGAGGGCAAGAAACTAAGTAGGACGCTGAGGCAGAAGCTTCTTTCAAGTGATTTATGGGCTGCGCATATTCAAAGTATATGGAAAGAAGTGGATGACAACTACTGGTGTCATGTGCGGTGGTATGTGATCCCAGAAGAGACTTCTGCTGGGCGACAACCTCATAACCTGAGCAGGGAACTGTATCAAACCAACGAATTTGCAGACATTGAGATGGAATCTATCCTTAGACATTGCTTTGTTATGACCCCGAAAGACTATGCCAAGGCTAGCAATGAGGGAGATGATATTTTCTTATGTGAATATGAATATGACATTCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAAAGAGGATGGCGAAGAGATTGACAGTGATGAAGATTGGAATGTTTCCAAGGAATCAGACTCTGATACAGATGATGATATTGTATATGAAGAGGAGAATTTAAAAAATACACGATCTCAACCATCAACAAGTCATCAGTCGGCAGCAAATCAATACAAAGGACGGTTCATTGGACTTCAGAAGATAGGTACAAAACGAATTCCGGAGCATGTAAGGTCTCACAAACAAACAGATCTCGAGAGAGTAAAGGCTTCACTATTGTTAGCATCATTGCCTAAATCGTTGCCATGTAGAAATAAAGAAATGGAAGAGATAAATACATTCATTAAAGGTGCTATTTGTGATGATCAATGTCTGGGGCGTTGCCTCTATATTCATGGTGTTCCAGGAACTGGCAAGACAATGAGCGTTCTATCAGTAATGAGGAGTTTGAGGTCTGAAGTTGATGCAGGAAACATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAGTTGGCTTCACCAGAGAATATCTATAGGGTCATATATGAGGCATTAAATGGGCACAGGGTTAGCTGGAAAAAGGCTCTTCACTTCTTGCATGAGAGATTTGTTGAAGGGAAGAAGACTGGGGAAGATGCTGATCGGCCATGTATTTTGCTTATTGATGAGCTTGATCTTCTTGTAACCAGAAACCAGTCGGTACTGTACAATATTCTTGACTGGCCTACTAAGGCACATTCCAAACTTATTGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTACTTCCTCGCATATCGAGTCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTTAAAGGAATCGATATATTTGAAAAGCAAGCCATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGACGTGCCTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATAAAGAAGCTAACTGTGAATCCTGATTTTGTTGCGGCAGGAAAAGGACTTGTTGGTATGACTGACGTTGAAGCTGCCATTCAAGAAATGTTCCAGGCACCTCATATTCAAGTGATAAAAAGCTGTTCCAGACTTAGCAAAATCTTCCTGACAGCTATGGTTCATGAACTTTATAAAACAGGAATGGGGGAAACCACTTTTGAAAAGCTGGCAATGACGGTTTCGTGTCTTTGTACAAGCAACTCTGAAGTGTGTCCCGGATATGATGTTCTTCTGCAAGTTGGCTGTAAGCTAGGCGAATGCAGGATTATTTTATGTGAAGCAGGTGCTAAGCACAGGCTGCAAAAATTGCAGCTCAATTTCCCAAGCGATGATGTAGCCTTTGCACTGAGAGACTGCAAGGATCTTCCTTGGCTGTCGAAGTATCTAAGTTAG 2568 0.4342 MAATPIKSLQSPSKPNLRSQSNYKPSPAITPLTPQSLPTPRRSTRQRSLHFNSTEPANFRQSIDYADDSTEVIKRRTGTARSASVVKGGSEKKAGEEVKQKNAKARDLVEIQFAPASPEQSETKKRKMESERKVVTRAMAAKKGKLENGDKGGKKSGRLTKRRVYYKKVVYDGGEFGVGDDVYVKRREDASSDDEDPEAEECRLCFDSGSEVMIECDDCLGGFHLKCLTPPLKEVPEGDWVCGFCEDRKMGRKASFPKPPEGKKLSRTLRQKLLSSDLWAAHIQSIWKEVDDNYWCHVRWYVIPEETSAGRQPHNLSRELYQTNEFADIEMESILRHCFVMTPKDYAKASNEGDDIFLCEYEYDIHWHSFKRLADIDNEKEDGEEIDSDEDWNVSKESDSDTDDDIVYEEENLKNTRSQPSTSHQSAANQYKGRFIGLQKIGTKRIPEHVRSHKQTDLERVKASLLLASLPKSLPCRNKEMEEINTFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHFLHERFVEGKKTGEDADRPCILLIDELDLLVTRNQSVLYNILDWPTKAHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDIFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKLTVNPDFVAAGKGLVGMTDVEAAIQEMFQAPHIQVIKSCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCTSNSEVCPGYDVLLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFALRDCKDLPWLSKYLS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00368 855 Gene3D - 256 459 IPR043151 -
Aip08g00368 855 SMART AAA_5 498 652 IPR003593 -
Aip08g00368 855 Pfam PHD-finger 202 247 IPR019787 -
Aip08g00368 855 ProSiteProfiles BAH domain profile. 257 374 IPR001025 GO:0003682
Aip08g00368 855 SMART BAH_4 233 374 IPR001025 GO:0003682
Aip08g00368 855 MobiDBLite consensus disorder prediction 75 132 - -
Aip08g00368 855 Pfam AAA lid domain 676 709 IPR041083 -
Aip08g00368 855 ProSiteProfiles Zinc finger PHD-type profile. 199 248 IPR019787 -
Aip08g00368 855 ProSitePatterns Zinc finger PHD-type signature. 202 245 IPR019786 -
Aip08g00368 855 Gene3D - 460 649 IPR027417 -
Aip08g00368 855 MobiDBLite consensus disorder prediction 381 405 - -
Aip08g00368 855 Pfam ATPase family associated with various cellular activities (AAA) 503 648 IPR003959 GO:0005524|GO:0016887
Aip08g00368 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 711 IPR027417 -
Aip08g00368 855 MobiDBLite consensus disorder prediction 1 63 - -
Aip08g00368 855 SUPERFAMILY FYVE/PHD zinc finger 189 252 IPR011011 -
Aip08g00368 855 Gene3D - 650 742 - -
Aip08g00368 855 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 128 850 - -
Aip08g00368 855 MobiDBLite consensus disorder prediction 90 106 - -
Aip08g00368 855 Pfam BAH domain 282 371 IPR001025 GO:0003682
Aip08g00368 855 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 128 850 IPR020793 -
Aip08g00368 855 SMART PHD_3 201 246 IPR001965 -
Aip08g00368 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 255 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00368 Aip-Chr8 2813252 2818627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00368 7 854 Core DNA Replication Machinery Family AT4G14700 60.859 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip08g00368 AAA 2.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00368 K02603 - gmx:100798547 1329.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00368 08 2813252 2818627 Aip08g00368 08 2813252 2818627 ECH