Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00356 ATGAATTCAAACAACTGGCTATCATTCCCACTCTCTCCAACTCATTCATCACTACCACCTCTGGGAACATTGGTGAATGACAACATCGATAACTCCTTTCAAAATCATGATTGGAATCTGATAAACAATGAGAGCAGCAGCAGTAGTCAAGTTCCGAAGGTAGCAGATTTTCTTGGTGTGAGTAACAAGTCTGAGAATGAGTCAGATCTTGCAGGCTTGGATGATGACTCGGATTACTTGTTCAACGCAAACACAACCCTTTTGCCTCTGCAAGTTCTTTCTAATAATAGCAGCTATGACTACCAACAACAAGAAGACAGTAACAACAATAACAGTAGTAGTAATCTTCATCAGTCACTCACACTCTCCATGGCTACTGCCAACAAGGACTCCACTACTTCCGACACCACTTGTGCCACTGCCATCGTTGAAGCTTCAGCTGCTGCCCCGAGAAGAGCTTTGGATACCTTTGGTCAGAGAACTTCTATTTATCGTGGTGTAACAAGACATAGGTGGACTGGAAGGTATGAAGCTCATCTATGGGATAATAGTTGTAGAAGGGAGGGTCAATCAAGAAAAGGTCGCCAAGGTGGATATGACAAAGAAGAGAAAGCAGCAAGGGCTTATGATTTAGCCGCACTTAAGTACTGGGGAACTTCCACCACTACCAACTTTCCCATGAGTAACTACGAGAAAGAGTTGGAAGACATGAAGCACATGACAAGACAGGAATTCGTAGCAGCCATTAGAAGGAAGAGCAGTGGATTCTCAAGGGGAGCATCAATGTATCGTGGAGTCACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATAGGAAGAGTAGCGGGAAACAAAGATCTGTACTTGGGAACTTTCAGTACGGAAGAAGAAGCTGCAGAAGCTTATGACATTGCAGCCATAAAGTTCAGAGGTCTAAATGCAGTTACAAACTTCGACATGAGTCGCTACGATGTGAAAGCCATTCTTGAAAGCAACACACTTCCCATTGGAGGAGGTGCTGCAAAACGCTTAAAGGAAGCTCAGGCTCTAGAATCTTCTAGAAAGACTAATAGAGATGATATCATAGCATTGGGATCCACCTTTCCATACGGATCTTCTTCATCAAACACAACCGCCACCAGATTTTTGCAGCAAGCAACAGCTTATCCTTTAATGCCGCAGCACCACTTCGATCATCATCATCATCATCAACCATTGTTAACGTTACAGAACCATGACATATCACAACATTACAACACTGATCCTGCTTCTTCTTCGTTTCATCATACTAATTCTTATCTCCAAACGCAGCTTCAGCTCCATCATCAACAGCATCAAACTACTTCTTCTTCTTCTTCGTCTTCATACAATAATAATAATGCTCAATTTTACAGCAGCTACCTTCAGGGATTCATGGACCATAACAATGGGAATGGCGGAGGAGGTTACCATCATCATCATCATAACACTAATAATATGATTGGGATTGGAATGGGTTCTAATAATAACTCCTCATCGAGCAATGCCACAGCAGTGGGATCAGCGGAGGAGCTTGCTCTTGTGAAGGTTGATTATGACATGCCTTCCGCGGGATACGGCGGCTGGTCGCCGGCGGCAGACACCATGCACGGTTCAAACGGCGGTGGTGTCTTCACAATGTGGAATGAATGA 1674 0.4385 MNSNNWLSFPLSPTHSSLPPLGTLVNDNIDNSFQNHDWNLINNESSSSSQVPKVADFLGVSNKSENESDLAGLDDDSDYLFNANTTLLPLQVLSNNSSYDYQQQEDSNNNNSSSNLHQSLTLSMATANKDSTTSDTTCATAIVEASAAAPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPMSNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKTNRDDIIALGSTFPYGSSSSNTTATRFLQQATAYPLMPQHHFDHHHHHQPLLTLQNHDISQHYNTDPASSSFHHTNSYLQTQLQLHHQQHQTTSSSSSSSYNNNNAQFYSSYLQGFMDHNNGNGGGGYHHHHHNTNNMIGIGMGSNNNSSSSNATAVGSAEELALVKVDYDMPSAGYGGWSPAADTMHGSNGGGVFTMWNE 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00356 557 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Aip08g00356 557 Gene3D AP2/ERF domain 163 228 IPR036955 GO:0003700|GO:0006355
Aip08g00356 557 SMART rav1_2 262 326 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 SMART rav1_2 163 232 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 MobiDBLite consensus disorder prediction 439 458 - -
Aip08g00356 557 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 556 - -
Aip08g00356 557 CDD AP2 162 228 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 5 556 - -
Aip08g00356 557 ProSiteProfiles AP2/ERF domain profile. 163 226 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 CDD AP2 261 322 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 ProSiteProfiles AP2/ERF domain profile. 262 320 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 Pfam AP2 domain 163 218 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 Pfam AP2 domain 263 312 IPR001471 GO:0003700|GO:0006355
Aip08g00356 557 SUPERFAMILY DNA-binding domain 261 322 IPR016177 GO:0003677
Aip08g00356 557 SUPERFAMILY DNA-binding domain 162 228 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00356 Aip-Chr8 2711669 2714241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00356 1 557 AP2-EREBP Transcription Factor Family AT1G51190 59.380 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip08g00356 AP2 2.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00356 K09285 - gmx:100788471 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00356 08 2711669 2714241 Aip08g00356 08 2711669 2714241 ECH