Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00354 ATGACGTGTCCAGCCTCGCCGGAATTCGATCTCGACAACCTCAAAGCACTCAAAATTCTAGGCAGAGGCGCCATGGGCACCGTCTTCCTCGTCCAACACACAACCACCGCCACCTATCTTGCTCTCAAGGTGGTCGACAAGTCCTCCGTTGACGCAAAGCCAGACTCCGACCGCCGTGCCCGCTGGGAAACCCAAGTGCTGTCCCGCCTCTCCCACCCCTTCCTCCCTTCGCTCCTCGGCACCTTCGAAACAGACCACTTGCTTGGCTGGGGCGTCCCTTACTGCCCCGGCGGCGACCTCAACGTCCTCCGCCACCGCCAAGTGGACCGCGTCTTCTCCCCCGCCGTCATCCGCTTCTACGTGGCCGAGATCCTCTGCGCTCTCGACCACCTCCACTCCATCGGCATCGCCTACCGCGACCTCAAACCTGAAAACGTCCTCATCCAACAAACCGGCCACGTCACCCTAACTGATTTCGACCTCTCACGCAACCTCACTCTTCCCAAACCGAAAACGGTTACAATAACAAATCTCATAACTGATCCCAAGGCCTCTAACAGAAAACATGACACGTGTCACCACCAGAGCCAAAAAGGACTGAAGAAGCCTAAGTCCGCGCGAGTCAGTCCTGTTAGTCGCCGCAGGCCGAGTTTTTCCGCCGGAGAAAGGTCGAACTCCTTCGTCGGTACGGAGGAGTACGTGGCTCCGGAGGTGGTTCACGGGGATGGTCACGAGTTCGCCGTTGATTGGTGGGCCCTAGGGGTGCTGACGTACGAGATGCTGTACGGAAGGACGCCGTTTAAGGGGAAGAACAGAAAGGAGACGTTTCGGAACGTGTTGATGAAGAAGCCTGAGTTCATCGGGAAGCAGACGGTGTTGACGGATTTGATCTCGCGGTTGCTGGAGAAGGAACCTTCTAGAAGGTTGGGTTCCGTACGTGGAGCCGATGAGATCAAAGACCATGAGTTTTTCAGAGGTCTCAAGTGGGACCTCCTGACGGCGGAGGTGGTCATGAGGCCGCCGTTTATTCCATCCAGAGATGATGAAGCCCACTTCACGGAGAAACTGACTGGTGGCGGTGCCGCTGGCGGAGTGGACGTAAGGGATTACTTCCAGAGGTTGAAGGCTCCGCAGTCGCCTTCTTGCGAGCTTCACCGGAAGAATGTTTCGTGGGGAGAATTCTGA 1185 0.5705 MTCPASPEFDLDNLKALKILGRGAMGTVFLVQHTTTATYLALKVVDKSSVDAKPDSDRRARWETQVLSRLSHPFLPSLLGTFETDHLLGWGVPYCPGGDLNVLRHRQVDRVFSPAVIRFYVAEILCALDHLHSIGIAYRDLKPENVLIQQTGHVTLTDFDLSRNLTLPKPKTVTITNLITDPKASNRKHDTCHHQSQKGLKKPKSARVSPVSRRRPSFSAGERSNSFVGTEEYVAPEVVHGDGHEFAVDWWALGVLTYEMLYGRTPFKGKNRKETFRNVLMKKPEFIGKQTVLTDLISRLLEKEPSRRLGSVRGADEIKDHEFFRGLKWDLLTAEVVMRPPFIPSRDDEAHFTEKLTGGGAAGGVDVRDYFQRLKAPQSPSCELHRKNVSWGEF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00354 394 Pfam Protein kinase domain 221 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00354 394 Pfam Protein kinase domain 16 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00354 394 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Aip08g00354 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Aip08g00354 394 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 9 378 - -
Aip08g00354 394 ProSiteProfiles Protein kinase domain profile. 14 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00354 394 SMART serkin_6 14 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00354 394 PANTHER FLIPPASE KINASE 1-RELATED 9 378 - -
Aip08g00354 394 SUPERFAMILY Protein kinase-like (PK-like) 12 346 IPR011009 -
Aip08g00354 394 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Aip08g00354 394 Gene3D Transferase(Phosphotransferase) domain 1 222 345 - -
Aip08g00354 394 Gene3D Transferase(Phosphotransferase) domain 1 99 167 - -
Aip08g00354 394 MobiDBLite consensus disorder prediction 184 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00354 Aip-Chr8 2670945 2672470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00354 9 394 AGC Kinase Gene Family AT3G20830 58.824 3.72e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aip08g00354 Pkinase 3.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00354 - K08286 zju:107412708 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00354 08 2670945 2672470 Aip08g00354 08 2670945 2672470 ECH
Aip08g00354 08 2670945 2672470 Aip03g00596 03 5817927 5819630 PCT