Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00350 ATGGAGTCAGATCTTCAGGCACCGAGTTCGAACGGGTTGACACGGTACCGATCGGCACCGAGTTCATACTTCACGGACATAATTGACCGCGAATTCTACGAGCACATTTTCAACCGTCCGTCAAGTCCAGAAACAGAGCGAGTCTTCTCCAGGTTCATGAACAGTCTCCGTGACGATGCTGCACCTGAAGACGATTCACTCCATCTCGATTCTTCTTCTGTCAAAGAAGAACACGATATCACTCCCTCGCAACCTCTTCTCTTTCAACACCACCAGCAGCAGCAGCAGCAGAACAACGTCAATAGCTTCAACTATCAAAGCACGTCGAGACCGCCGTTGCCGAATCAGAATCAGAATCTTGCTTCCTCCGGTGGTGTAGAAGGAGTGTATTCTAATAATAATAATAACAATAATCGGTTGCCGCAGACGAAGAATCAATCTAATCTTGTTAGGCACAGTAGCTCACCTGCTGGACTATTTTCCCAAATTCACATTGAAAATGGGTATGTTGTTGATATGCGAGGGATGGGAACTTTAGGAGCAGTAAATAAGAGTGTGGAAGAAGTGAAGTTCTCTTCTTCAAGGACAAGGAGGTTGAAGAATCCACAGAACTACTCCTCCTCCGCCTCCGGGAGAATGTCTTCAATAGCTGAGATTGGCAATAGGGACAGCAGAGAAGACAATCCAGATGCTGAAGCTTTTGGGGAAACCCAGGGCGAGGATTTCATCACGGAGTTGGCGCCCTGGGATGATTCTGTCGCCGTGAATGACATTGTTGCTGGTCTAAAAAGATTCAGAGATGATGATGTGAAGCCATTTTCTTCTGGTTTGAATGCAGCTGAGACTCAGAACGAAAGTAGAGGACAGCAAGCTGCTCCTTTGGCTCATCAAATGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTCTTGCAATTTTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATAAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTGGCTGTCGATTACATCAAAGACCTTCAAAAGCAAGTTGAGACGCTTTCAGACTGTCAAGCTAAGTGTACGTGTTCTTCCAAGCCACAGCAATAA 1209 0.4582 MESDLQAPSSNGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSRFMNSLRDDAAPEDDSLHLDSSSVKEEHDITPSQPLLFQHHQQQQQQNNVNSFNYQSTSRPPLPNQNQNLASSGGVEGVYSNNNNNNNRLPQTKNQSNLVRHSSSPAGLFSQIHIENGYVVDMRGMGTLGAVNKSVEEVKFSSSRTRRLKNPQNYSSSASGRMSSIAEIGNRDSREDNPDAEAFGETQGEDFITELAPWDDSVAVNDIVAGLKRFRDDDVKPFSSGLNAAETQNESRGQQAAPLAHQMSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCQAKCTCSSKPQQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00350 402 Gene3D - 331 399 IPR036638 GO:0046983
Aip08g00350 402 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 399 - -
Aip08g00350 402 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 60 - -
Aip08g00350 402 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 60 - -
Aip08g00350 402 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 96 399 - -
Aip08g00350 402 MobiDBLite consensus disorder prediction 59 77 - -
Aip08g00350 402 MobiDBLite consensus disorder prediction 85 153 - -
Aip08g00350 402 Pfam Helix-loop-helix DNA-binding domain 335 381 IPR011598 GO:0046983
Aip08g00350 402 MobiDBLite consensus disorder prediction 59 153 - -
Aip08g00350 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 392 IPR036638 GO:0046983
Aip08g00350 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 380 IPR011598 GO:0046983
Aip08g00350 402 MobiDBLite consensus disorder prediction 196 213 - -
Aip08g00350 402 MobiDBLite consensus disorder prediction 193 213 - -
Aip08g00350 402 SMART finulus 336 386 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00350 Aip-Chr8 2631299 2634233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00350 6 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.695 3.78e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00350 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00350 - - gmx:100805812 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00350 08 2631299 2634233 Aip08g00350 08 2631299 2634233 ECH
Aip08g00350 08 2631299 2634233 Aip03g00601 03 5874642 5885310 ECH
Aip06g00343 06 3987675 3990453 Aip08g00350 08 2631299 2634233 ECH
Aip02g01815 02 79335277 79338427 Aip08g00350 08 2631299 2634233 ECH