Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00331 ATGGATTCCGAGGACGATATGCACGACGCCAACGATGTGGAGTCACTCGACGAAGATTTCTACAGTGGCGAGACCGAAGAAGCTCCCATGGATTACAATGACTACGATGACGATGCCGATGACTACTTCGACGATGCTGATGATTCTGATAGGATTGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCGGATATTCAGCAAAGGCAGGAAGATGACATCACTAGAGTGGCAACCGTTCTTTCAATATCACGAGTTGCTGCGAGTATCCTGCTTCGTCATTACAATTGGAGTGTTAGTAAAGTGCACGATGCCTGGTTTGCTGACGAAGATCGAGTCCGTAAAACAGTTGGTTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATCCTAGAGAGATAACTTGTGGCATCTGTTTTGAAACGTATCCTCGTACTAAGATTCAAACTGCTACTTGTGGCCATCCTTATTGTTTTTCTTGCTGGGCAGGATATATTAGCACATCTATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCCGATCCCACTTGTGGCGCTGCTGTTGATCAAGGCATGATTAATCTCTTAGCACCTGATGAAGATAAAGAAAAGTATGCCCGTTACCTTCTTAGGTCATATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGCTGTGAATATGCTGTCAATTTTGACGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCATCGTCCAGTTGATTGTGGCACTGTGTCAAAGTGGATTCTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCGAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACGTGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTCGGTGCATGGTCAGATCATGGTGAAAGGACTGGGGGTTTTTATGCTTGCAATCGATATGAGGCAGCAAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACGCATTATTATGAGCGATGGGCCAGCAATCAATCCTCGAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAGCTTAGTGACACACAATGCCAGCCCGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGCCGACGGGTGCTGAAGTGGACATATGCATATGGATATTACTTGCCTGAGCATGAACATGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAATCTGGTTTGGAGCGACTTCATCAATGTGCTGAAAAGGAACTACAGTTGTTCCTTAATACTGATGGCCCATCTAAAGAATTCAATGACTTCCGCACAAAACTAGCTGGATTAACCAGTGTAACTAGAAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCAAGCAAAGCGACAAGCTCTAAAAATGCCGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTCTTCGGGCGAGCATGGCTAGTAGTAGAATGACCGACGATAATCATTGGTCCTGTGAGCAATGTACCTATGCAAATGCGAAATCTGCCACCACGTGCCAGATCTGCAACCAACAGCGCCGATGA 1773 0.4433 MDSEDDMHDANDVESLDEDFYSGETEEAPMDYNDYDDDADDYFDDADDSDRIESRRPEQNFTILKESDIQQRQEDDITRVATVLSISRVAASILLRHYNWSVSKVHDAWFADEDRVRKTVGLLEKPVVQHPNPREITCGICFETYPRTKIQTATCGHPYCFSCWAGYISTSINDGPGCLMLRCPDPTCGAAVDQGMINLLAPDEDKEKYARYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNTDGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKGTLRASMASSRMTDDNHWSCEQCTYANAKSATTCQICNQQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00331 590 ProSiteProfiles TRIAD supradomain profile. 134 347 IPR044066 -
Aip08g00331 590 Pfam IBR domain, a half RING-finger domain 286 334 IPR002867 -
Aip08g00331 590 Pfam IBR domain, a half RING-finger domain 207 269 IPR002867 -
Aip08g00331 590 SUPERFAMILY RING/U-box 133 219 - -
Aip08g00331 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Aip08g00331 590 MobiDBLite consensus disorder prediction 1 47 - -
Aip08g00331 590 SUPERFAMILY RING/U-box 207 276 - -
Aip08g00331 590 MobiDBLite consensus disorder prediction 521 539 - -
Aip08g00331 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 219 IPR013083 -
Aip08g00331 590 CDD RING-HC_RBR_TRIAD1_like 138 188 - -
Aip08g00331 590 Pfam Ariadne domain 356 518 IPR045840 -
Aip08g00331 590 MobiDBLite consensus disorder prediction 521 559 - -
Aip08g00331 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Aip08g00331 590 SMART zf_4 564 588 IPR001876 -
Aip08g00331 590 SUPERFAMILY RING/U-box 288 336 - -
Aip08g00331 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Aip08g00331 590 SMART ibrneu5 282 343 IPR002867 -
Aip08g00331 590 SMART ibrneu5 207 269 IPR002867 -
Aip08g00331 590 Coils Coil 585 590 - -
Aip08g00331 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Aip08g00331 590 ProSiteProfiles Zinc finger RING-type profile. 138 182 IPR001841 -
Aip08g00331 590 MobiDBLite consensus disorder prediction 1 59 - -
Aip08g00331 590 Gene3D - 265 520 - -
Aip08g00331 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Aip08g00331 590 Gene3D - 560 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00331 Aip-Chr8 2480048 2484493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00331 17 589 ARIADNE family AT1G65430 71.280 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00331 K11968 - gmx:100810427 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00331 08 2480048 2484493 Aip08g00331 08 2480048 2484493 ECH
Aip08g00331 08 2480048 2484493 Aip03g00616 03 6067518 6073518 PCT