Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00319 ATGCGCCTTTCCATACCGAATCCCTCTCCTCCCTTCTGTTCTGTTCTGAATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAACTGCACGGAACACACGCGCGCCCTCACACACAGAGCATAATTCTCACAATCAAGGACGCTTCCTACGACAATCGAATTCGCGTCGTTCTCAATTTTCATGGAGCTCGAATTGTAAGGCAAAGGGCAGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTTAGTTCCGGTAAATGGGTTGTCACAAAGTTTGTAAAGGAGCACACACACCCTTTGACACCTGGAAAAGGCAGAAGGGATTGCATTTATGAACAATATCCGAATGAACATGATAAAATTCGAGAACTATCTCAGCAATTGGCTATAGAGAAAAAACGGTGTGCAGCTTATAAAAGGCAACTTGAATTGTTATTTGAACACATTGAGGAGCATAATAATAGTCTTTCAAAGAAAATACAGCACATAGTAGGCAATGTGAAGGAGATTGAAGCTGAAGAACAACAGCGTCATAGATAG 549 0.4299 MRLSIPNPSPPFCSVLNLLSLSLSLSLQLHGTHARPHTQSIILTIKDASYDNRIRVVLNFHGARIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIEKKRCAAYKRQLELLFEHIEEHNNSLSKKIQHIVGNVKEIEAEEQQRHR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00319 182 Pfam FAR1 DNA-binding domain 64 104 IPR004330 -
Aip08g00319 182 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 64 180 - -
Aip08g00319 182 Coils Coil 124 144 - -
Aip08g00319 182 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 64 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00319 Aip-Chr8 2390761 2392435 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g00319 FAR1 3.9e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00319 - - adu:107461550 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00319 08 2390761 2392435 Aip08g00319 08 2390761 2392435 ECH
Aip08g00319 08 2390761 2392435 Aip03g00630 03 6168369 6170708 PCT