Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00315 ATGAAGATTCAGTGTGATGTTTGTGAGAAGGCTCAAGCAACTGTGATTTGTTGTGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAGGTTCATGCTGCCAATAAGCTTGCTAGAAAGCACCAGAGGCTTCTCCTTCAATGCCTCTCTAACAAGCTTCCCAGATGTGACATATGCCAAGACAAGCCAGCTTTCATATTCTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGCGACGAACCGATTCACTCGGCCGGAAGCCTCTCGGCGAACCACCAGAGATTCCTTGCTACCGGAATCCAAGTGGCCTTGAGTTCTTCTTCTAATTGCAACAAAGGCAATGAAAAGAGTCACTTGGAGCCACCTAATAGGAACAATGCACAACAAGTTTCTATGGAAGTTCCTCCTCAGCAAGTTCCTAACTTCTCATCTTCTTCTTGGGGTGTTGATGACTTATTGGAACTATCAGCCTTTGAATCACCTGAAAAAGGTGTGGTTCAGAAGGAATCTATGCAGTTTGGAGAATTAGAATGGATTGAAGATGTTGGTCTTTTTGGTGAACAATTTCCACATGAAGCATTGGCTGCTGCTGAAGTTCCTCAGCTTACAAGCAACAATGCTGCTTCATTCAGAACAACCTCTAAGTCCTACATGTCTCACAAGAAACCTAGGATTGAAGATGATGATGATGAGTTCTTCACAGTGCCAGATCTTGGTTGA 726 0.4421 MKIQCDVCEKAQATVICCADEAALCAKCDVEVHAANKLARKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIQVALSSSSNCNKGNEKSHLEPPNRNNAQQVSMEVPPQQVPNFSSSSWGVDDLLELSAFESPEKGVVQKESMQFGELEWIEDVGLFGEQFPHEALAAAEVPQLTSNNAASFRTTSKSYMSHKKPRIEDDDDEFFTVPDLG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00315 241 CDD Bbox1_BBX-like 57 98 - -
Aip08g00315 241 Gene3D Classic Zinc Finger 1 95 - -
Aip08g00315 241 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 241 - -
Aip08g00315 241 CDD Bbox1_BBX-like 5 47 - -
Aip08g00315 241 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Aip08g00315 241 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aip08g00315 241 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Aip08g00315 241 MobiDBLite consensus disorder prediction 110 134 - -
Aip08g00315 241 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 241 - -
Aip08g00315 241 SMART bboxneu5 52 99 IPR000315 GO:0008270
Aip08g00315 241 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00315 Aip-Chr8 2358815 2360369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00315 1 171 Orphan Transcription Factor Family AT1G06040 60.112 1.48e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip08g00315 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00315 - - gmx:100814727 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00315 08 2358815 2360369 Aip08g00315 08 2358815 2360369 ECH
Aip08g00315 08 2358815 2360369 Aip03g00634 03 6185285 6188096 PCT