Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00299 ATGGAACCATACCCTTATTCTCCCAAGAGAAGTGGTGCCTCGTATTGGGGATCTTGTAGAGTTCAGTTGGAGGGATCAACATCGTTAGATGGTGATATGAGCAATTCAATTTCAGATGATATGGCTTGTAGCTTCTCCGGGCTCATGAATATTGATCCTTATGCCGGCTTGTACAATAGCCCATCGATAACTGATCAGGTTTTCAGTAATGGCCTTCCATCATCATATCCATCGACCCCTGGGTTCAATCTAGAGGAAAACAATAGTAGCCAATTCTTCATGACAGAAATGAATGGATATTTCAACACTAAACAAGGCTCCCCTGGTTATGGGGAGAAAATTGCGTTTCAACAAATGGACCCCTTACTTGGTTTTTTTGATGGTACAGATGACACACATAGTTTAAGTTCTATGCAAAAAATTAATGGCTCTTCTCAACACCTTGATGCCATTGGCAGTTATATCATGTCCAAGCCAGCTAGTTTGTCACTTGATGAGAGAATGTTGAAAGCCTTGTCCGTCTTTAAGGAATCAGCTGGTGGTGGAATATTGGCACAGGTTTGGGTTCCTATAAAGGATGGTGATCAATTCTTCTTGACCACAAGTGAACAGCCTTATTTACTAGACCAAATTCTTGCCGGATATCGTGAAGTGTCAAGAACATACACATTTTCTACTGAAGGAAAACCGGGTTCTCTCCCAGGACTTCCTGGTCGTGTGTTTATGTCCAAAACTCCTGAGTGGACTTCCAACATTGGTTATTACAATAAGAATGAGTACTTGAGGATGGATGATGCGATTAATCATGAGGTTCGTGGATCAATTGGTTTACCCATATCTGATCTGCACTCTGAACTGCCATGTTGTGCTGTACTGGAACTTGTCACTACAAATGAAAAGCCTGATTTTGAGAAGGAAATGGATATTGTTTGTCATGCACTACAGGTAGGTTTTTCCTTTGCTATTTACTGCTCAACTTCATGTCTTTCAAACAGCAAACGTGCTGCTTTAACGGCCATAGTTGATGTCTTACGTTCCGTTTGTCATGCGCATAGATTGCCAATGGCACTGACATGGATTCCTTGTTGTGTCGCTGAGGACGCAGAAGGTAAAGATACAAAGATACACATTAAAGAGGGTCATTCGAGTCCTCGTGAAAAGAACATACTATGCGTTGAAGAATCAGCATGCTATGTAACTGATAAAGCAATGGAAGGATTTGTTCATGCTTGCATTGAACACCATCTTCAGGAAGGGAAAGGTATAGCTGGGAGAGCTCATCAATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGCCTATAATATTAGTGAATATCCACTTGTTCATCATGCGCGCAAGTACAATCTGAATGCTGCAGTTGCAATTAGGCTGAGGAGTACTTATACTAATGATGATGATTACATACTGGAATTCTTTTTGCCTGTAAACATGAAAGGGAGCTCAGAACAGCAACTTCTCTTAGACAACCTCTCAGGTACCATGCAGAAAGTTTGTAGGAATTTAAGAACAGTTTCAGATGAGGAATTATCAAGAATGAAAAGCTCACAAGTAGGATTTAAAAACAAAAATGTCCCTAGAATTTTTCCTATGTCCAGGAGAAACTCCCAAATACCATTAACAAACAGTAACCATGATTCAGTCCGTAAGATGTCCATCAAGGCATCTAACCAAGGAAACAATGGAATTGAGTCTTCTCATAACCAGGAAAGAAATCGATCAAGAAGGATGGTTGAGACAAAGAGACCAGCTGAGAAGAAAGTTAGTTTGAGTGTTCTTCAGCAACACTTTTCCGGTACTCTGAAGGATGCTGCTAGGAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGAAACAAGGGATTTCGAGATGGCCATCCCGCAAGATCAAGAAAGTGAACCGATCGTTAAAGAAAATACAGACCGTGCTCGACACTGTCGAAGGACTGGAAGGAGGGTTGAAGTTTGATCCCTGTATAGGGGCACTTGTATCAAGAGAAGGAGAATCAATCATCCAAGAAATTGATGCACACGATACTCTTTTGCACCCTGAGAATGTTACTGCAAAAGAAAAATGGATTCTGAACAAGGGTGGTTCAAGAGAAGACAAATCAAAACATTCAAGTATCTTGGTTAATAGGGATGATGATGGAGCTGTTGAACATAACCACCCTTCTTCTTCAGGCTTTACAAACTCATCTAATGATTCTGGTTCAAACCAGAGGCAGAACTTGAAAGGCAAATCAACCTTTGCCGATAAAACTGGGTTGAAACTTCAAGCCAAAGCTACCTATGGCGAAGACACGGTTCGTTTCAAGTTTGATCCATCCTGGGGTTGTTTGAAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCGTTTCAACTCAAATATCTAGATGATGAACAAGAGTTGGTGAGGTTGTTAGATGACTCAGATTTGCAGGAGTGTATTGAAATATTGGATGAAGCTGGGAAAAGTTGTGTCAGGTTTGTTGTTCGCGACATACCATGCAATTTAAGCAGCTCCAGCTGCAGTAGTTGCTACCTAGGATGTGACTCATAG 2604 0.4101 MEPYPYSPKRSGASYWGSCRVQLEGSTSLDGDMSNSISDDMACSFSGLMNIDPYAGLYNSPSITDQVFSNGLPSSYPSTPGFNLEENNSSQFFMTEMNGYFNTKQGSPGYGEKIAFQQMDPLLGFFDGTDDTHSLSSMQKINGSSQHLDAIGSYIMSKPASLSLDERMLKALSVFKESAGGGILAQVWVPIKDGDQFFLTTSEQPYLLDQILAGYREVSRTYTFSTEGKPGSLPGLPGRVFMSKTPEWTSNIGYYNKNEYLRMDDAINHEVRGSIGLPISDLHSELPCCAVLELVTTNEKPDFEKEMDIVCHALQVGFSFAIYCSTSCLSNSKRAALTAIVDVLRSVCHAHRLPMALTWIPCCVAEDAEGKDTKIHIKEGHSSPREKNILCVEESACYVTDKAMEGFVHACIEHHLQEGKGIAGRAHQSNHPFFCPDVKAYNISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQKVCRNLRTVSDEELSRMKSSQVGFKNKNVPRIFPMSRRNSQIPLTNSNHDSVRKMSIKASNQGNNGIESSHNQERNRSRRMVETKRPAEKKVSLSVLQQHFSGTLKDAARSIGVCPTTLKRICRKQGISRWPSRKIKKVNRSLKKIQTVLDTVEGLEGGLKFDPCIGALVSREGESIIQEIDAHDTLLHPENVTAKEKWILNKGGSREDKSKHSSILVNRDDDGAVEHNHPSSSGFTNSSNDSGSNQRQNLKGKSTFADKTGLKLQAKATYGEDTVRFKFDPSWGCLKLYEEVATRFKLQNGSFQLKYLDDEQELVRLLDDSDLQECIEILDEAGKSCVRFVVRDIPCNLSSSSCSSCYLGCDS 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00299 867 MobiDBLite consensus disorder prediction 562 592 - -
Aip08g00299 867 Gene3D - 766 850 - -
Aip08g00299 867 MobiDBLite consensus disorder prediction 733 756 - -
Aip08g00299 867 SUPERFAMILY CAD & PB1 domains 768 851 - -
Aip08g00299 867 MobiDBLite consensus disorder prediction 575 592 - -
Aip08g00299 867 ProSiteProfiles PB1 domain profile. 767 849 IPR000270 GO:0005515
Aip08g00299 867 PANTHER PROTEIN NLP8 6 700 IPR045012 GO:0003700
Aip08g00299 867 PANTHER PROTEIN NLP8 725 864 IPR045012 GO:0003700
Aip08g00299 867 Pfam PB1 domain 770 848 IPR000270 GO:0005515
Aip08g00299 867 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 700 - -
Aip08g00299 867 MobiDBLite consensus disorder prediction 724 756 - -
Aip08g00299 867 Pfam RWP-RK domain 595 642 IPR003035 -
Aip08g00299 867 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 725 864 - -
Aip08g00299 867 ProSiteProfiles RWP-RK domain profile. 571 662 IPR003035 -
Aip08g00299 867 SMART PB1_new 767 849 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00299 Aip-Chr8 2232193 2236474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00299 768 864 NLP Transcription Factor Family AT2G43500 64.948 5.76e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip08g00299 PB1 6.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00299 - - aip:107613413 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00299 08 2232193 2236474 Aip08g00299 08 2232193 2236474 ECH
Aip08g00299 08 2232193 2236474 Aip03g00655 03 6374443 6376485 PCT