Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00291 ATGAAGTGTATGTGTGAAAAAGACTCTGCTCTATGTTCTGTTCATGCAACACCAGCCTATGTTCTTGGATGCTCATCATCATGGGGTAATTCTCCTGAATCTGATGTTGTCCAACAATCATCCATGTCTGATAAATTGAACTTAAACATGGGTGTTGTTCTGCCACAACAATGTCACAAGAGTAGGCCACTAAATCTCCAATTTCAAGAGCAGGATTCATCTTCAACTCTTTCCACCAATCAATCTGGTCAAATTTCTATCCAGCATAGCAATTCTTCAGCTTGTTCATCATCACTTAGCAGAAATATGGAGAAGACTGCTGGAAATCAAATCAGTTCTTCAATGGGGATTCTTGATTTTTCCTTCCCTCCTTCGGAACTCGATCGCGGCCAATCAACTGCTCCAATTGCATTTCATTGTGCATATCCATGCTATGGTGGCATACTAGCTGCTGCATATGGCCAACACTCTAAGGTAATTGGAAGTGAAGCAGTTCGGATTCCTCTGCCACTTGATCTGAGAGAAGAACCTATATATGTGAATTCAAAGCAGTATCATGCTATATTGAGACGTAGACAGTACCGAGCTAAACTCGAAGCACATAACAAACTCATCAGAGATCGCAAACCTTATCTTCACGAGTCTCGCCATCTACATGCACTGAAGAGAGCTAGAGGTGCTGGTGGACGCTTTCTCAACACTAAGAACCTCGACCAATCAAAGGTTACTTCTACCACCACCACTTCCTACCAGGCTTACATTGGAAGGGATATCCAGGACTATACGGCAGATACCGGTGGCGCCGCCAGTCACCGCCGTCTGTCTGTTCTTATGTGA 837 0.4373 MKCMCEKDSALCSVHATPAYVLGCSSSWGNSPESDVVQQSSMSDKLNLNMGVVLPQQCHKSRPLNLQFQEQDSSSTLSTNQSGQISIQHSNSSACSSSLSRNMEKTAGNQISSSMGILDFSFPPSELDRGQSTAPIAFHCAYPCYGGILAAAYGQHSKVIGSEAVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKLIRDRKPYLHESRHLHALKRARGAGGRFLNTKNLDQSKVTSTTTTSYQAYIGRDIQDYTADTGGAASHRRLSVLM 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00291 278 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Aip08g00291 278 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Aip08g00291 278 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 35 251 - -
Aip08g00291 278 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Aip08g00291 278 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Aip08g00291 278 MobiDBLite consensus disorder prediction 70 99 - -
Aip08g00291 278 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Aip08g00291 278 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 251 IPR001289 GO:0003700|GO:0006355
Aip08g00291 278 Gene3D - 174 236 - -
Aip08g00291 278 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00291 Aip-Chr8 2176188 2178821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00291 4 240 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.254 5.25e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aip08g00291 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00291 K08064 - gmx:100500765 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00291 08 2176188 2178821 Aip08g00291 08 2176188 2178821 ECH
Aip03g00715 03 6885725 6888352 Aip08g00291 08 2176188 2178821 PCT