Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00282 ATGGCTGCGCATGCTTCTTCTGAAACTATTAAGTATGATGTCTTCCTCAGCTTCAGAGGCACAGATACTCGCCGCGGTTTTCTCAGCCATCTGCTTAAGGCTTTAGAGGACAAACACATCGACACATATGTGGATTACATGCTCAGAGAAGGAACTGAAATATCACACTCACTCCTTACAGCCATTGAACAATCACAAATTGCTTTGATCATATTCTCCCATGATTATGCTTCTTCCAAGTGGTGTTTGGAAGAACTAGTCAAAATAATGGAATGCAGAAGAAAAAATGGTCAAATTATTGCAATACCCGTTTTTTATAACGTAGATCCATCATGGGTGCGCCATCAAAGGGGAAGCTATCACGATGCACTTGCTAATCATGAGATAAGATCTGCAGACAAGGTGCAAATATGGCGAGATGCTCTCAAGGAAGCTGCCAATTTGTCTGGATTGCATTCACCATCATCAAGCTTCAGGAATGATGCTGAACTCATTGATGAAATTGTCAAACGGGTCATACAAAGGTTAAACCAAACATGCCAAGGTGATCTGATGCAGGGTCTTGTTGGAATTCATGAACCAATTGCAGAGCTAGAATCATTGTTGTGCACAGAATCAGAAGCAGTTTCTATTATTGGCCTTTGGGGCATGGACGGTGTTGGTAAGACCACGCTTGCTAGAGAAGAAGATGCAAGTCCCTTTGTCACGCCTGGTGGGATAACTAATTTTGCCAAGAAAAGACTTAATCGAACAAAGGTTCTTGTTGTTCTTGATGATGTCAATGATTCAGACCAAATGGAAGATTTATGTGGAGGACATACATGGTTTGGGGCAAGTAGCAGAATCATAGTGACAACAAGAAATAAGCATGTCCTTGTTAAGGCGGATGCTGATCATATACATGAGGTTGAGACATTGAATTCTGATGATTCTCTTTGGCTTTTCAGCCTGAATGCCTTCAAGCAAAACTGTAGAACAAGTTTTGTCCAAGAGAGTGCTTAA 1002 0.4132 MAAHASSETIKYDVFLSFRGTDTRRGFLSHLLKALEDKHIDTYVDYMLREGTEISHSLLTAIEQSQIALIIFSHDYASSKWCLEELVKIMECRRKNGQIIAIPVFYNVDPSWVRHQRGSYHDALANHEIRSADKVQIWRDALKEAANLSGLHSPSSSFRNDAELIDEIVKRVIQRLNQTCQGDLMQGLVGIHEPIAELESLLCTESEAVSIIGLWGMDGVGKTTLAREEDASPFVTPGGITNFAKKRLNRTKVLVVLDDVNDSDQMEDLCGGHTWFGASSRIIVTTRNKHVLVKADADHIHEVETLNSDDSLWLFSLNAFKQNCRTSFVQESA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00282 333 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Aip08g00282 333 Pfam TIR domain 11 190 IPR000157 GO:0007165
Aip08g00282 333 Gene3D - 179 236 IPR027417 -
Aip08g00282 333 Pfam NB-ARC domain 247 326 IPR002182 GO:0043531
Aip08g00282 333 Gene3D - 5 178 IPR035897 -
Aip08g00282 333 SMART till_3 11 148 IPR000157 GO:0007165
Aip08g00282 333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 236 326 IPR044974 GO:0006952
Aip08g00282 333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 227 IPR044974 GO:0006952
Aip08g00282 333 Gene3D - 237 301 IPR027417 -
Aip08g00282 333 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 150 IPR035897 -
Aip08g00282 333 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 236 326 - -
Aip08g00282 333 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 8 227 - -
Aip08g00282 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00282 Aip-Chr8 2115523 2116851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00282 7 315 WRKY Transcription Factor Family AT4G12020 27.684 6.74e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00282 - - ahf:112705135 493.041