Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00273 ATGTTTGTTGATGAAGCAGATACTTGTGTGATCTTCGATCATTTTTGCAAGGAAGAGGATATGGCTGCGCATGCTTCTTCTGAGATTATTAAGTATGATGTCTTCCTCAGCTTCAGAGGCACAGACACTCGCCGTGGTTTTCTCAGCCATCTGCGCAAGGCTTTAGAGGACAAGCACATCAAGACATACGTGGATTACATGCTCAGAGAAGGAATTGAAATATTGCACTCACTCCTTGCAGCCATTGAACAATCAGAAATTGCTTTGATCATATTCTGCCAGGATTATGCATCTTCCCAATGGTGTTTGGAAGAACTAGCCAAAATATTGGAATGCAGGAAACAAAATGGTCAAATTATAATACCTATTTTCCATAATGTAGACCCATCATGGGTGCGCCGCCAAAAGGAAAGTTATCACCATGCGCTTGCTAATCATGAGGTGAGGTTTGCAGACAGGGTGCAAATCTGGAGAGATGCTCTCAAGGAAGCTGCCAACTTGTCTGGATTCCATTCACCGTCATCAAGCTTCAGGAACGATGCTGACCTTGTTGATGAAATTGTCAAAGTGTCTTACAAAGCTGTTATTGTTGGCCTTTGGGGCATGGGCGGCGTTGGTAAGACAACTCTTGCGACTGCAGTTTTCAATAGATTGTGTGATGGATTTGAAGGATTTTGCTTTTTGAACAATGTAAGAGAAAGAGCTGAGAAATATGGTATAGATCATTTGAAGACAGAACTTCTTTCCAAACTGCTAAAGGAAGAAGATGCAAGTCCCTTTGTCACGCCTGGTGGGATAACTAATTTTGCCAAGAAAAGACTTAGTCGAACAAAGGTTCTTGTTGTTCTTGATGATGTCAATGATTCAGATCAAATGGAAGATTTATCTGGAGGACATACATGGTTTGAGGCAAGTAGCAGAATCATAGTGACAACAAGAGATAAGTATGTTCTTGCTACAGCTGATGCAGATCATATACATGAAGTTAAGACATTGAATCCTGATGAATCTCTTTGGCTTTTCAACTTGAATGCCTTTAAGCAAAACTGCGTTATAAAAGCATAA 1065 0.4066 MFVDEADTCVIFDHFCKEEDMAAHASSEIIKYDVFLSFRGTDTRRGFLSHLRKALEDKHIKTYVDYMLREGIEILHSLLAAIEQSEIALIIFCQDYASSQWCLEELAKILECRKQNGQIIIPIFHNVDPSWVRRQKESYHHALANHEVRFADRVQIWRDALKEAANLSGFHSPSSSFRNDADLVDEIVKVSYKAVIVGLWGMGGVGKTTLATAVFNRLCDGFEGFCFLNNVRERAEKYGIDHLKTELLSKLLKEEDASPFVTPGGITNFAKKRLSRTKVLVVLDDVNDSDQMEDLSGGHTWFEASSRIIVTTRDKYVLATADADHIHEVKTLNPDESLWLFNLNAFKQNCVIKA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00273 354 ProSiteProfiles TIR domain profile. 30 195 IPR000157 GO:0007165
Aip08g00273 354 Pfam TIR domain 31 189 IPR000157 GO:0007165
Aip08g00273 354 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 170 IPR035897 -
Aip08g00273 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 350 IPR027417 -
Aip08g00273 354 Pfam NB-ARC domain 189 349 IPR002182 GO:0043531
Aip08g00273 354 Gene3D - 14 165 IPR035897 -
Aip08g00273 354 SMART till_3 31 167 IPR000157 GO:0007165
Aip08g00273 354 Gene3D - 167 327 IPR027417 -
Aip08g00273 354 PRINTS Disease resistance protein signature 196 211 - -
Aip08g00273 354 PRINTS Disease resistance protein signature 273 287 - -
Aip08g00273 354 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 194 350 - -
Aip08g00273 354 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 22 190 - -
Aip08g00273 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 194 350 IPR044974 GO:0006952
Aip08g00273 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 190 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00273 Aip-Chr8 2051804 2053125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00273 32 342 WRKY Transcription Factor Family AT4G12020 26.163 1.09e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00273 - - ahf:112705135 592.808