Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00268 ATGGATCCAAATAAGAAACTAGAGGAAGCAGCAGCAACTTCAGAAATGGATAAGGGCAAGATGGCAGCATCATCAGAAGAAGAACCAGTACCAACTTCAGACATGGATATATCAAAAGAAGAAGAATCATCAGAAGAAGAATCATCAGAAGAAGAAACTGCGGATGCTGCGGAAACCGAGGCCAGATTAATTGCTGAAGCAGTGTTCCAAGAAAAGGTGGCCGAATTAGGAGCCATACGTATGCAAGCACGAAATCTTGTTGAAGAATACAAAATAGGCTTAAAGGTTCTCACAGAGTTGCGGGATAAAACTTTGCGTGAGGCAATCAAATTCAACCGGCCTCCTCCGAAGGATGATAAAGACGGCGATGATAAAGATATAGATAAAGATAATCTAACTAAAATAACAGTTGAAGCTTCTGATCACCTGCTCGGCTGCTCCAGACTTGAGCTAATCCAAAAGCTTTCTGCCGATGGGCAAGAATTCTTCACCTCATATGATGAAGTCTATGATAGTTTTGATGCAATGGGATTACAAGAAAATCTTCTCAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTAGATGTGATTCAGCAGGCTCAATCTGGAACCGGCAAGACAGCAACATTCTGTTCCGGAATTTTGCAGCAGCTTGATTATGGAGTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAGCAAATTGAGAAGGTTATGCGAGCACTTGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTCCAGGCCGGTGTCCACACTGTTGTTGGCACTCCCGGCCGTGTTTTTGACATGCTGCGGAGACAGTCTCTTCGCCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCAGATGAAATGCTTTCTCGTGGTTTCAAAGACCAGATCTATGACATCTTCCAGCTTCTACCATCCAAAATTCAGGTTGGAGTGTTTTCTGCTACCATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTTAAGCGAGATGAATTGACCCTTGAAGGTATCAAGCAGTTTTATGTGAATGTTGAGAAGGAAGAATGGAAGCTAGAGACACTCTGCGACCTTTATGAGACTCTGGCCATCACACAGAGTGTCATCTTTGTGAACACAAGGCGCAAGGTGGATTGGCTCACTGACAAGATGAGAAGCAACGATCACACCGTTTCGGCCACACACGGCGACATGGATCAAAACACTCGCGACATCATTATGCGCGAATTCCGGTCAGGCTCATCGAGAGTTCTCATCACCACTGATTTATTGGCTAGAGGCATAGATGTGCAGCAAGTGTCTCTGGTTATAAACTATGATCTGCCAACTCAACCTGAGAACTATCTTCACCGCATAGGAAGGAGTGGAAGGTTTGGAAGGAAAGGTGTTGCTATAAACTTTGTGACTTTGGATGATGCAAGGATGCTTTCTGATATTCAGAAGTTCTACAATGTCAATGTAGAAGAGTTGCCATCAAATGTTGCTGATCTCCTCTGA 1635 0.444 MDPNKKLEEAAATSEMDKGKMAASSEEEPVPTSDMDISKEEESSEEESSEEETADAAETEARLIAEAVFQEKVAELGAIRMQARNLVEEYKIGLKVLTELRDKTLREAIKFNRPPPKDDKDGDDKDIDKDNLTKITVEASDHLLGCSRLELIQKLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGVVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVNVEELPSNVADLL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00268 544 SMART helicmild6 424 505 IPR001650 -
Aip08g00268 544 CDD SF2_C_DEAD 384 514 - -
Aip08g00268 544 Pfam Helicase conserved C-terminal domain 397 505 IPR001650 -
Aip08g00268 544 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Aip08g00268 544 Gene3D - 161 379 IPR027417 -
Aip08g00268 544 PANTHER RNA HELICASE 154 544 - -
Aip08g00268 544 MobiDBLite consensus disorder prediction 108 127 - -
Aip08g00268 544 CDD DEADc_EIF4A 175 373 - -
Aip08g00268 544 SMART ultradead3 190 387 IPR014001 -
Aip08g00268 544 MobiDBLite consensus disorder prediction 1 24 - -
Aip08g00268 544 Pfam DEAD/DEAH box helicase 196 357 IPR011545 GO:0003676|GO:0005524
Aip08g00268 544 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 154 544 - -
Aip08g00268 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 171 199 IPR014014 GO:0003724
Aip08g00268 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 544 IPR001650 -
Aip08g00268 544 MobiDBLite consensus disorder prediction 1 58 - -
Aip08g00268 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 372 IPR014001 -
Aip08g00268 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 525 IPR027417 -
Aip08g00268 544 Gene3D - 380 544 IPR027417 -
Aip08g00268 544 MobiDBLite consensus disorder prediction 39 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00268 Aip-Chr8 2013537 2024554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00268 155 544 Eukaryotic Initiation Factors Gene Family AT1G72730 90.537 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00268 K03257 - gmx:100777628 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00268 08 2013537 2024554 Aip09g00740 09 9252211 9255883 PCT