Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00267 ATGGAGCCTCGCATTGCCAACAAGTTCCGTCTTGGCCGCAAGCTCGGTAGCGGATCATTCGGGGAGATCTATCTCGGGACTAACGTTCAGACCAATGAAGAGGTTGCAATTAAGCTTGAAAGTATCAAAACCAAGCATCCTCAGCTGTTGTATGAATCAAAGCTGTACAAAATACTTCAAGGAGGAACTGGGATCCCAAATTTGAAATGGTTTGGTGTTGAGGGAGAATACAACGTCCTTGTTATAGATTTGCTGGGTCCTAGCCTCGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCCCTGAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGGGTTGAATTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATGCCATTGACTTTGGTCTTGCTAAGAAATACAGAGACAGCTCTACCCATCAGCATATTCCATATAGAGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAGTCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCATGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGATAAAATTAGTGAGAAGAAAGTTTCTACTTCCATTGAGTCTCTCTGCCGTGGCTATCCTTCAGAATTTGCTTCATATTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTACGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATCTTGAAATATCAGCAATCTCAAATTGCCTCTCCTCCCGTTCGTCCTGTTGGTCTTCCTCCAGGGCCAAGTTCTGGCTTGCCACCAGCTGCTTTGAATGCTGATAGACACTCGGGTGGAGAAGATGGTAGGCATACTGGTTTGTCTTCATCAGATCCTACTCGTAGAAGGCACTCTGGACCTATTGCAAATGATGGAAACTTATCCAGACAAAAGGCCCCTGTTGCAAATGACACTACTAGATCCAAAGATGGGATGTTGTCTAGTTCTAATTTCTTTCGGTCAAGTGGATCTACAAGAAGAGTGGCTTTCTCAGGCGGTCGTGAAGCGGTAGTTGGCAGTGGTACTGAACACTCCCGTTCTCAGACCCTGGATGCAAATCCAGGAGCACTCCGGAAAATATCTGGTGCCCAGAAGAATTCACCTATCATCTCTTCTGAGCACACCCGGGCACCTTCTGGCATAGCCACATCAAACATAAGGAATTTTGAGTCAACTCTCAGAGGATTTGAGAACCTGAATCTCAATGAGGAGAGGGTAAAGTAG 1419 0.4348 MEPRIANKFRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLESIKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGEYNVLVIDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIASPPVRPVGLPPGPSSGLPPAALNADRHSGGEDGRHTGLSSSDPTRRRHSGPIANDGNLSRQKAPVANDTTRSKDGMLSSSNFFRSSGSTRRVAFSGGREAVVGSGTEHSRSQTLDANPGALRKISGAQKNSPIISSEHTRAPSGIATSNIRNFESTLRGFENLNLNEERVK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00267 472 PANTHER CASEIN KINASE-RELATED 1 448 - -
Aip08g00267 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00267 472 MobiDBLite consensus disorder prediction 355 390 - -
Aip08g00267 472 MobiDBLite consensus disorder prediction 304 390 - -
Aip08g00267 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Aip08g00267 472 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Aip08g00267 472 MobiDBLite consensus disorder prediction 328 343 - -
Aip08g00267 472 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00267 472 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 448 IPR030509 GO:0004672|GO:0005524
Aip08g00267 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00267 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Aip08g00267 472 CDD STKc_CK1_delta_epsilon 8 282 - -
Aip08g00267 472 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00267 Aip-Chr8 2007618 2011616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00267 7 223 EF-hand Containing Proteins AT2G17890 27.111 1.63e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Aip08g00267 Pkinase 8.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00267 K02218 - gmx:100778165 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00267 08 2007618 2011616 Aip09g00738 09 9243121 9246711 PCT