Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00263 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGCCTTTGGTCACCAGAAGAAGATGAAAAACTCATCAACTACATCACCACCTATGGCCATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGGTTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATTAATTATCTCAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCTCTCATTATTGACCTCCATAGCATTCTAGGCAACAGGTGGGCTCAGATTGCAAAACACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTTCTTTCCCATGATGTTCTTGTTCCTTCTTTGGCCACATTTTCTGATCATCATATCCATCATCATCATCATCATGGCCTTATTGCCAATAATAATAATGGTTCTTCCTTAGAAACTTTCTTCCCTGAAAACCCTATCCTAAACCCTCATCAGCTATACCTTCCAATAATCCCATCATCAATCCTTCAAGCTTTTGATCAACAAAATGTTATTGATATCAAGCAGCAGCAGCTTGATAACAATAACATTAATTATAACAATAATGGCAACAACTTCCATCACCATATTCAAATGCCTACTGCAGAAACAGTAGTAGTACCATCCATGAATACTACTGTTAATCCATCATCATCTTTGTATGAAGATACTTGGTCATCATCATCATTTGGATGTGTGCTACCTCTTCAAGAAGATCATCAGATTTCCAAAAATAGTAGTGATCATGATATTGCCATCACTGCTGCCACCCCATCAAACTATATTATTGATAAACTCATCATCAATAATCCAGTTAGTACTACATGGCAGCAGCATTTTGATCTTCATCACTTGATGGAACCAGTTGTCCCAAAAATCTGTGATATTAATAACACCAACATCATTGAGGATTATATTTGTGGCTTACCATATTCACCTGCTTCATCATCACAACAAGATCCTCTTGCTAGAATCCACTGTTACACTACTACTACTACTACTACTACACCTGCTTCTGCTTCTGCTGCTGCTATTTGTCCACAAGATCAAGCAACTCTTCTGGCTGCAAATCATCATCAATTGGAACAACAACAACAACACATTGATAATAATAATAATAATAATCCCCTCATCATTCCATCATCATTGCCATCATCAACATCTTCTTCATCAGCATCACTCTATCAAGCAGATCACATTTAG 1245 0.3847 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIDLHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVLVPSLATFSDHHIHHHHHHGLIANNNNGSSLETFFPENPILNPHQLYLPIIPSSILQAFDQQNVIDIKQQQLDNNNINYNNNGNNFHHHIQMPTAETVVVPSMNTTVNPSSSLYEDTWSSSSFGCVLPLQEDHQISKNSSDHDIAITAATPSNYIIDKLIINNPVSTTWQQHFDLHHLMEPVVPKICDINNTNIIEDYICGLPYSPASSSQQDPLARIHCYTTTTTTTTPASASAAAICPQDQATLLAANHHQLEQQQQHIDNNNNNNPLIIPSSLPSSTSSSSASLYQADHI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00263 414 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip08g00263 414 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip08g00263 414 PANTHER TRANSCRIPTION FACTOR MYB26 1 401 - -
Aip08g00263 414 CDD SANT 17 61 IPR001005 -
Aip08g00263 414 PANTHER MYB DOMAIN PROTEIN 55 1 401 - -
Aip08g00263 414 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip08g00263 414 Gene3D - 11 67 - -
Aip08g00263 414 Gene3D - 69 140 - -
Aip08g00263 414 MobiDBLite consensus disorder prediction 374 414 - -
Aip08g00263 414 CDD SANT 69 109 IPR001005 -
Aip08g00263 414 SMART sant 13 63 IPR001005 -
Aip08g00263 414 SMART sant 66 114 IPR001005 -
Aip08g00263 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip08g00263 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip08g00263 414 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Aip08g00263 414 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00263 Aip-Chr8 1933234 1935047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00263 1 118 MYB Transcription Factor Family AT3G13890 95.763 9.56e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00263 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00263 K09422 - gmx:102662609 377.867