Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00257 ATGAGCAGCAGACCAGAAATAATGTTGGGCCTGATCCTAATGTGCAGCCCAACAGAGGCCCACAACCCAACATGGACCAAGATGTTAGTGATGGCGGGTTTGGCTCCTGAAGGAACACAATTCGATGCTCGGCAATATGATTCTAAGATGAATGATTTGCTTTCTGCCGATGGGCAAGAATTCTTCACCTCATATGATGAAGTCTATGATAGTTTTGATGCAATGGGATTACAAGAAAATCTTCTCAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTTTAGATGTGATTCAGCAGGCTCAATCTGGAACTGGCAAGACAGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGAGTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAGAAAATTGAGAAGGTTATGCGAGCACTTGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTCCAGGCCGGTGTCCACACTGTTGTTGGCACTCCCGGCCGTGTTTTTGACATGCTGCGGAGACAGTCTCTTCGCCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCAGATGAAATGCTTTCTCGTGGTTTCAAAGACCAGGAGCATACCATAGACGGCAGAGTGGTTGAAGTGAAGAGGACTGTCCCTAGGGAGGACATGGAAGTTACTGGAGTATTCAGAACAAAGAAGATCTTTGTTGGCGGATTACCCCAGTTTTTCACTGATGATGAATTGAAGGATTACTTTTCAACTTATGGTAATATTGTTGAGTACCAAATCATGCTAGATCATAAAACTGGAAGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCGGTTGAAAAGGTCTTCTCGGCAGGAAAAATACATGAACTTGGAGGCAAGCAGGTTGAGATTAAGAGAGCCGAGCCTAAAAGATCAGGGAATTCATATGGTGGAATGGATGGATTTGGTGCATACAGTTCTAGAGGTCATAATCATGGAAAATGGGATGAACCGTATACTAATTTTGGCATGAACAGGCAATGTGGCCATTTCGAAGGAAGCTACGGAGGAATCTCTGCAGCATCCTACGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTAGAATGTATGGGTCTGGTGGGTATAGATTCAATCCTTATGGCAATAGTGGTTGTGGTTATGGTGGCATGAGTATGCATGGAAGAGCAGGTCGTTTCAATCGTACTGGTAGCAATGACAATGATAGTCCTGCTGCTGCAAGATATCATCCTTACTGGAATGGATTGGTTTTACAAAATCAGGAAACCATAGAAAGGTAA 1416 0.4386 MSSRPEIMLGLILMCSPTEAHNPTWTKMLVMAGLAPEGTQFDARQYDSKMNDLLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGVVQCQALVLAPTRELAQKIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQEHTIDGRVVEVKRTVPREDMEVTGVFRTKKIFVGGLPQFFTDDELKDYFSTYGNIVEYQIMLDHKTGRSRGFGFVTFDNEDSVEKVFSAGKIHELGGKQVEIKRAEPKRSGNSYGGMDGFGAYSSRGHNHGKWDEPYTNFGMNRQCGHFEGSYGGISAASYGGYCGYGYGFGYGRMYGSGGYRFNPYGNSGCGYGGMSMHGRAGRFNRTGSNDNDSPAAARYHPYWNGLVLQNQETIER 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00257 471 Pfam DEAD/DEAH box helicase 95 247 IPR011545 GO:0003676|GO:0005524
Aip08g00257 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 331 IPR000504 GO:0003723
Aip08g00257 471 Gene3D - 258 378 IPR012677 -
Aip08g00257 471 SUPERFAMILY RNA-binding domain, RBD 260 363 IPR035979 GO:0003676
Aip08g00257 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 241 IPR027417 -
Aip08g00257 471 Gene3D - 43 257 IPR027417 -
Aip08g00257 471 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 258 - -
Aip08g00257 471 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 217 225 IPR000629 -
Aip08g00257 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 339 IPR000504 GO:0003723
Aip08g00257 471 PANTHER - 35 258 - -
Aip08g00257 471 CDD DEADc_EIF4A 74 263 - -
Aip08g00257 471 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 70 98 IPR014014 GO:0003724
Aip08g00257 471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 265 IPR014001 -
Aip08g00257 471 SMART rrm1_1 262 335 IPR000504 GO:0003723
Aip08g00257 471 SMART ultradead3 89 280 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00257 Aip-Chr8 1891731 1894561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00257 31 280 Eukaryotic Initiation Factors Gene Family AT3G13920 72.180 1.73e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00257 K03257 - gmx:100809395 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00257 08 1891731 1894561 Aip08g00257 08 1891731 1894561 ECH