Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00250 ATGTTACAACAACACAAGAAGCAAGCATTAGCAGGAGTAGTAATTCAAGAGAACATGTCAAACTTCACTCCACCACCACCATCTCAAACTCATGGACAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGACCCTGATGCTGAAGTAATAGCGTTGTCACCGAAGACTCTGATGGCGACGAACAGATTCTTATGCGAGATCTGTGGGAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTGCACAGAAGAGGCCACAACTTGCCGTGGAAGCTGAAGCAGAGAACGAAGACGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGCCAACTTGCGTACACCACGATCCCGGCAGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAGTACGCCGTTCAATCCGACTGGAAAGCTCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGCACCCTCTTCTCAAGGAGGGACAGTTTTATCACGCACAGAGCGTTTTGTGATGCGCTTGCAGAAGAAAGCGCGAGAGCTGTGACAGCTGTATCTCAGTCTCAATCTCATGAAATCCATGGATTCTCACTGAAGCAAGAGCAGCAAAGTAGTTTCAGCACCATGACACCGTGGCTTGATTTCTCGTCAGTTACTACTACGACGACGACTCCAAGGTTGGATCTGGATGAACAAGTACCAAATCGAAACCCTAACCCTAGCGGTGTAATTGGACCCACAGCGCACATGTCAGCAACTGCGTTGCTTCAGAAAGCAGCGCAGATGGGTGCAACCACCACCACCACCACCGTCAGCTCATCCGCACAACACTCACAGTCACAGCTCATCAGGACCCACCCGCAGGGTCACGTGTCTGACACTTTTGGTTTGAATTTGTCCTCACGTGACGACCCTACTGCTTTCGCTCACCATGGCTTCTTCCCGCCTCCTGCTTCTTCTCCGTCTCTCCTCCACCACGTCATCAACTCTTTTGACGACGCTTTTGGCGCCAATGACGGTGCTGGCGAGGGAATGACCAGGGATTTCTTGGGGCTTAGGCCTCTCTCTCATAGCGATATCCTCACCATTGCCGGTATCAGTAACTGCATCAACTCTACTTCTTCTTCTTCCCCGCATCATCATCACCAAAAGCCATGGCAAGATTAG 1224 0.5131 MLQQHKKQALAGVVIQENMSNFTPPPPSQTHGQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTKTEVVRKKVYVCPEPTCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTAVSQSQSHEIHGFSLKQEQQSSFSTMTPWLDFSSVTTTTTTPRLDLDEQVPNRNPNPSGVIGPTAHMSATALLQKAAQMGATTTTTTVSSSAQHSQSQLIRTHPQGHVSDTFGLNLSSRDDPTAFAHHGFFPPPASSPSLLHHVINSFDDAFGANDGAGEGMTRDFLGLRPLSHSDILTIAGISNCINSTSSSSPHHHHQKPWQD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00250 407 MobiDBLite consensus disorder prediction 18 49 - -
Aip08g00250 407 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Aip08g00250 407 Gene3D Classic Zinc Finger 61 88 - -
Aip08g00250 407 Gene3D Classic Zinc Finger 119 200 - -
Aip08g00250 407 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 23 300 - -
Aip08g00250 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 300 - -
Aip08g00250 407 MobiDBLite consensus disorder prediction 18 37 - -
Aip08g00250 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Aip08g00250 407 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Aip08g00250 407 SMART c2h2final6 142 162 IPR013087 -
Aip08g00250 407 SMART c2h2final6 107 137 IPR013087 -
Aip08g00250 407 SMART c2h2final6 65 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00250 Aip-Chr8 1836257 1839245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00250 36 394 IDZ Gene Family AT1G55110 51.741 3.84e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g00250 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00250 K25870 - gmx:100808344 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00250 08 1836257 1839245 Aip09g00679 09 8235258 8239010 PCT