Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00248 ATGACTGATCTCATCAAACCACTCGGTCCTACCGAGAGAAACATTGCCATGGAAACCATCATCTACGAATCTGAGATGCGAGCCTATGATCCTGTTAACGGTTGTTGTACAGTGATTCAACAGCTTCAATCTGAGATTGAGTACCGTCAAGCTGAGCTTCAACTTGTTCTTCATCGTCTCGCCCTCTTCAAAGCTCAAGCGCAGCAGCAATCTTCGAGTTGCAACCAAGCTAATAACGTTGAAGGAATTCCATTTCAACCGGATCAATATTATGAAGCTACTAACATGGATAGCAATAGCTCCATTACGCATGAAGTGGATCTTAATGCATGGATGATGCAAAACTTGCAATCACCTGCGTTGTTATCACCTTTGGCATTAACCAATGAGAATGAAAATGGCAATGTTGGAGTTGATGATAATAATGGCTATGTTTATGATCAGAAGCATATGCTTGACCTTGGTTTTAAAGAAACCAAATCAAATCATCAAACACCAGTGGAGGGCATGCATTATTCAGGGATGAAGCAAATTTAA 537 0.4078 MTDLIKPLGPTERNIAMETIIYESEMRAYDPVNGCCTVIQQLQSEIEYRQAELQLVLHRLALFKAQAQQQSSSCNQANNVEGIPFQPDQYYEATNMDSNSSITHEVDLNAWMMQNLQSPALLSPLALTNENENGNVGVDDNNGYVYDQKHMLDLGFKETKSNHQTPVEGMHYSGMKQI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00248 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 2 114 - -
Aip08g00248 178 Pfam Lateral organ boundaries (LOB) domain 3 56 IPR004883 -
Aip08g00248 178 ProSiteProfiles LOB domain profile. 1 60 IPR004883 -
Aip08g00248 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00248 Aip-Chr8 1807465 1808329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00248 1 85 AS2 family AT3G13850 39.806 2.84e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip08g00248 LOB 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00248 - - aip:107610289 327.405