LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g00237	ATGAGCCGTTACGACAGCCGCGCCGCCGACCCAGCTTCCTATCGTGACCGGAGAAGCGATTCGGGGCTAGGAGCACCTCCGGCTTCAGCTTCAGCTTCAGCTTCTAGTAGAAGGGATTACGATGACGGTGGAGCCTCCCCAAGGAAGCTCAATTTGGACGGCTTGCCCCATTTCGAGAAGAATTTCTACCATGAATCGCCTTCCGTTAGGGCAATGACTGAGTCCGAGGTTGACGACTACCGTCTCCGCAGGGAAATCACCGTTGAAGGCCGTGACGTCCCCAAACCTGTCAAGTCCTTTCACGATGTTGGCTTTCCAGAATATGTACTGCAAGAGATTAAGAAAGCTGGCTTTGTCGAACCTACGCCCATTCAATCTCAGGGTTGGCCAATGGCTTTGAAAGGGCGCGATCTGATCGGAATTGCGGAAACAGGGTCAGGGAAGACGCTTGCTTACTTGTTGCCAGCCATAGTTCATGTAAATGCTCAGCCAATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCCCCAACTCGTGAACTTGCCGTCCAAATACAACAGGAGGCTACTAAATTTGGTGCGTCGTCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGCGTTGAGATTGTAATTGCTACTCCCGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTAGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCACAGATTCGTCCAGATCGTCAGACTCTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTTCAGATTTAAAAGCTAACCATGCCATACGACAATATGTTGACATTGTTCCTGAAAAGCAGAAATATGACAAATTGGTGAAGCTGCTGGAGGACATCATGGACGGCAGCCGAATACTGATATTCATGGATACCAAGAAGGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCCGCACTATCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCAATAATGACTGCAACAGATGTGGCAGCTCGGGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAAGATTATGTACATCGTATTGGTCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACGTTTTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGACAAAGAGTGAGCCCTGAATTGGCTGCAATGGGGCGTGGTGCACCTCCTCCGCCATCAGGTTTCCGAGACCGAGGGAAGGGTTATGGCAGCAGTCGCCCGTGGAGCTAA	1506	0.4814	MSRYDSRAADPASYRDRRSDSGLGAPPASASASASSRRDYDDGGASPRKLNLDGLPHFEKNFYHESPSVRAMTESEVDDYRLRREITVEGRDVPKPVKSFHDVGFPEYVLQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSSDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGFRDRGKGYGSSRPWS	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g00237	501	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	250	258	IPR000629	-
	Aip08g00237	501	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	98	126	IPR014014	GO:0003724
	Aip08g00237	501	CDD	DEADc_DDX5_DDX17	109	304	-	-
	Aip08g00237	501	Pfam	Helicase conserved C-terminal domain	329	438	IPR001650	-
	Aip08g00237	501	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	332	477	IPR001650	-
	Aip08g00237	501	Gene3D	-	61	306	IPR027417	-
	Aip08g00237	501	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	53	488	-	-
	Aip08g00237	501	PANTHER	LD32873P	53	488	-	-
	Aip08g00237	501	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	129	304	IPR014001	-
	Aip08g00237	501	Gene3D	-	307	478	IPR027417	-
	Aip08g00237	501	MobiDBLite	consensus disorder prediction	1	51	-	-
	Aip08g00237	501	SMART	helicmild6	357	438	IPR001650	-
	Aip08g00237	501	CDD	SF2_C_DEAD	317	447	-	-
	Aip08g00237	501	Pfam	DEAD/DEAH box helicase	122	293	IPR011545	GO:0003676\|GO:0005524
	Aip08g00237	501	MobiDBLite	consensus disorder prediction	1	17	-	-
	Aip08g00237	501	MobiDBLite	consensus disorder prediction	472	501	-	-
	Aip08g00237	501	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	170	454	IPR027417	-
	Aip08g00237	501	SMART	ultradead3	117	320	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g00237	Aip-Chr8	1700356	1704118	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip08g00237	85	458	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.667	2.39e-78	249

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g00237	K12823		-	gmx:100781619	904.82