Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00234 ATGGCAGTAATGGAAGAAAAGCATTCTCTTCTCCATGGAACAATTGAAGCTACTATCTTTGATGCCACACCTTATTCTCCTTCATTTCCCTTTAATTGTCTATGTCCAAATGGAAAGCCTGCTTTTGTGACCATCAAAATAGGCAACAAGGTGATGGCAAAAACTACACAAGAAAGAGGGCGTGTGTGGAACCAAACTTTTCAGATTCAATGTGCTCATCCATGTGATTCAACCATCACCATCACTCTGAAAACATCATGTTCCATATTGGGAAAATTCCAAATTAAGGCTCAGCAATTGAAAGAAGGAAGCTTCATGAATGGTTTCCTCCCCCTCCTAATGGAAAATGGAAAACCAAGCACACAACTCAAGTTGAGGTTCATATTATGGTTTAAGCCAGCAGATTTGGAGACAAGTTGGGCAAAGATAATTAGCAGTGGGGATTATAAAGGGATTAATGATGCTACATTCCCTCAGAGGTCTAATTGTCAAGTTAAGCTCTATCATGATGCTCATCATTCACATGATTTTCAACCTCCTTTTGATCTATGTGGAGCACCAAGAAATCTATGGGAGGATGTCTACAAAGCAATTGAGGGTGCAAAGTATTTAATTTACATTGCAGGGTGGTCCTTCAATCCCAACATGATTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCCAGAGAAGTAAAGTTGGGTGAACTATTGAAGAGGAAAGCAGATGAAGGAGTGGCTGTGAGGATTATGATTTGGGATGATGAGACATCTTTGCCTTTTATTAAGATCAAAGGTGTTATGAACACCCATGATGAAGAATCTTTTGCTTACTTCAAACACACAAAAGTAATATGCAGAAAATGTCCAAGATTACACCATAAGTTCCCCACAGTCTTTGCTCACCACCAGAAAACTATAACTGTGGACACCAGAGCACCCAACAACTCTGCTAATGAAAGAGAGATTCTGAGCTTCTTGGGTGGTGTTGATCTCTGTGATGGTCGGTACGACACAGAGACACACTCGTTGTTCCGAACACTTGACAAGGAATCTCATTACCATGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCATGGCATGATGCTCATGCTTGTGTAACTGGTGAGGCTGCATGGGATGTTTTAACAAATTTTGAGCAAAGATGGACAAAGCAATGTGATCCTTCTCTTCTAGTCCCTGCCAACACCTTAGTAAAGCTCTATCCTTCTTTTGCAAGTAATCCCTCTGAGAGGGATTGGAAAGTTCAGGTATACCGGTCGATTGATCATGTATCTGCTAGTCAAATGTTTAGAAAGCTTACTGTTGAGAGAAGCATACATGAGGCTTATGTGGAAGCGATTAGGCGCGCCGATAAATTCATATATATTGAGAACCAATATTTCATTGGAGGGTGCCATATGTGGGAGAAAGATAGTTATAGTGGCTGTGGAAATCTGATTCCAGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAAAGAGAGGTTTGCAGTGTACATAGTAATACCAATGTGGCCAGAAGGTGTTCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGGCAATGATGTATGGATTAATTGGAGAAGCAATACAAGAAAGTGGTGAACCTGGGCACCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGGGAACAGAAGGGAATAGATGAGTTTCTTCCACCACATTCTCCACATCCTGAAACACAATACTGGAATGCACAGAAAAACAGAAGGTTCATGGTTTATGTCCATTCCAAGATCATGATTGTGGACGACCTATACATATTAATAGGATCAGCCAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACAGAGATTGCCATAGGATGCTACCAGTCTCAAGATGGAGCTGAGTCTGACAAACTCATGAATCATGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAACACACCCGGAGCACTGATGAACTGTTCTTGGAGCCGGAAAGGTTGGATTGTGTGCATAGAATGCGGTTGATAGGAGATAAAATGTGGCAAGTGTACAGGAATGAAGAGATTGTGGACATGGATGGTGTGCACCTTGTAACATACCCCATTAAGGTAACACAAGAAGGGTGTGTAGAGGACATGCCTAATGGTGAAGATTATTTTCCTGATACAAAATGTTTAGTGAAAGGAAAGAGATCTAAATTACTACCCCCTCTATTTACCACTTAG 2292 0.4132 MAVMEEKHSLLHGTIEATIFDATPYSPSFPFNCLCPNGKPAFVTIKIGNKVMAKTTQERGRVWNQTFQIQCAHPCDSTITITLKTSCSILGKFQIKAQQLKEGSFMNGFLPLLMENGKPSTQLKLRFILWFKPADLETSWAKIISSGDYKGINDATFPQRSNCQVKLYHDAHHSHDFQPPFDLCGAPRNLWEDVYKAIEGAKYLIYIAGWSFNPNMILVRDPQTEIPHAREVKLGELLKRKADEGVAVRIMIWDDETSLPFIKIKGVMNTHDEESFAYFKHTKVICRKCPRLHHKFPTVFAHHQKTITVDTRAPNNSANEREILSFLGGVDLCDGRYDTETHSLFRTLDKESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSLLVPANTLVKLYPSFASNPSERDWKVQVYRSIDHVSASQMFRKLTVERSIHEAYVEAIRRADKFIYIENQYFIGGCHMWEKDSYSGCGNLIPVEIALKVVSKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMAMMYGLIGEAIQESGEPGHPRDYLNFFCLANREQKGIDEFLPPHSPHPETQYWNAQKNRRFMVYVHSKIMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDGAESDKLMNHGDIHAYRMSLWYEHTRSTDELFLEPERLDCVHRMRLIGDKMWQVYRNEEIVDMDGVHLVTYPIKVTQEGCVEDMPNGEDYFPDTKCLVKGKRSKLLPPLFTT 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00234 763 PIRSF PLD_plant 2 763 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Aip08g00234 763 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Aip08g00234 763 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 129 IPR035892 -
Aip08g00234 763 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 336 IPR001736 GO:0003824
Aip08g00234 763 Pfam Phospholipase D C terminal 680 752 IPR024632 -
Aip08g00234 763 SUPERFAMILY Phospholipase D/nuclease 148 425 - -
Aip08g00234 763 SMART pld_4 298 336 IPR001736 GO:0003824
Aip08g00234 763 SMART pld_4 606 633 IPR001736 GO:0003824
Aip08g00234 763 Gene3D Endonuclease Chain A 177 417 - -
Aip08g00234 763 Pfam C2 domain 41 112 IPR000008 -
Aip08g00234 763 PANTHER PHOSPHOLIPASE D ALPHA 6 763 - -
Aip08g00234 763 SUPERFAMILY Phospholipase D/nuclease 425 706 - -
Aip08g00234 763 Pfam Phospholipase D Active site motif 299 336 IPR001736 GO:0003824
Aip08g00234 763 PANTHER PHOSPHOLIPASE D 6 763 IPR015679 -
Aip08g00234 763 Gene3D Endonuclease Chain A 418 668 - -
Aip08g00234 763 Pfam PLD-like domain 462 644 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00234 Aip-Chr8 1682662 1685400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00234 33 763 Phospholipase D Gene Family (Wang group) AT1G55180 62.148 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00234 K01115 - gmx:100807431 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00234 08 1682662 1685400 Aip08g00234 08 1682662 1685400 ECH
Aip08g00234 08 1682662 1685400 Aip09g00617 09 7272069 7280254 PCT