Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00232 ATGGACTCTGAAGCTGAACCTCCTGAAACTGAAAACCCACCCAAAAGACACAAGTGCTCGGCATGCTATAAGCAATACAAGAAAAAGGAGCATCTTATTGAGCACATGAAAATCTCTTACCACTCTCTTCATCAGCCGAGATGTGGGGTTTGTCAAAAGCATTGCAAATCTTTTGAGTCTCTCAGGGAGCATCTTACCGGTCCTTTGCCAAAAGGACTTTGTGCAACAATTTTCTCTCAACAAGGTTGTCAACTTTGCTTGTCAATATTTGATAGTGCCGTATCTCTCAGGGAGCATTTAGAAACATGCCGCTTATCTTCCCCTGCTCCTATGGGAACCGATGCAATGCCCTATATAAGCTCCCAAATTGACGATCTAGATTCCTATGATGAAAATGGTGCTGGTGGACGTCCTAGAGCAATTGCAATGGATTGTGAAATGGTTGGTGGTGGGAGTGATGGAACGCTGGAAATTTGTGCAAGAGTATGCTTGGTTGACGAAGACGAGAATTTAATCTTCCACACATATGTACAGCCAATAATCCCTGTTACTAACTACAGATATGATATAACTGGGTTGACTGAAGAGAATCTTAGAAATGCTATGCCACTGAAGGAGGTTCAGAAAAATGTATTGCAAATTCTATATAACGGAGAATCCACTGGCAAAGTTCTAGATGGGGGGAAGGCCAGGCTTCTTGTGGGGCATGACTTAGAACACGATTTTGATTGCTTGAAATTGAATTATCCCAAACACTTGCTGAGGGACACTGCAAAGTATCGACCATTGATGAAGACAAACTTGGTTAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAAAGCGGCGCTCATGATCCATATGAAGACTGTATTTCTGTGATGAGACTATATAAGAGAATTCGAGGTCAAATTCATAAGGAGGAAGGCTATGGAACATTGACTTCCAATAACAACATAGGCAAGTCCGATTGTTGGGAATCCGAGAAAGTAAGTAACCTCACACCAGATGAACTATATGCCATGTCAAGATCAGACTACAGATGTTGGTGTTTGGATTTGAGACCAAACTTGGCACCCTGA 1098 0.4208 MDSEAEPPETENPPKRHKCSACYKQYKKKEHLIEHMKISYHSLHQPRCGVCQKHCKSFESLREHLTGPLPKGLCATIFSQQGCQLCLSIFDSAVSLREHLETCRLSSPAPMGTDAMPYISSQIDDLDSYDENGAGGRPRAIAMDCEMVGGGSDGTLEICARVCLVDEDENLIFHTYVQPIIPVTNYRYDITGLTEENLRNAMPLKEVQKNVLQILYNGESTGKVLDGGKARLLVGHDLEHDFDCLKLNYPKHLLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGAHDPYEDCISVMRLYKRIRGQIHKEEGYGTLTSNNNIGKSDCWESEKVSNLTPDELYAMSRSDYRCWCLDLRPNLAP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00232 365 ProSitePatterns Zinc finger C2H2 type domain signature. 19 41 IPR013087 -
Aip08g00232 365 Gene3D Classic Zinc Finger 2 67 - -
Aip08g00232 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 361 - -
Aip08g00232 365 CDD REX4_like 141 304 IPR037431 GO:0006364|GO:0008408
Aip08g00232 365 Pfam Exonuclease 141 303 IPR013520 -
Aip08g00232 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 46 IPR013087 -
Aip08g00232 365 Gene3D - 136 320 IPR036397 GO:0003676
Aip08g00232 365 PANTHER EXONUCLEASE FAMILY PROTEIN 14 361 - -
Aip08g00232 365 SMART exoiiiendus 139 312 IPR013520 -
Aip08g00232 365 SUPERFAMILY Ribonuclease H-like 140 307 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00232 Aip-Chr8 1671418 1674335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00232 1 362 C2H2 Transcription Factor Family AT2G48100 55.495 3.73e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00232 K18327 - gmx:100805841 595.119