Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00229 ATGAGGACGATCAAAGAGTTTTTCTTGAGGCACTACTACTCTCTGTGGTTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACGACGTAGAGAATCACAGGAACAGCGACGTCGCCACAAAACAAAGGAAGATCAACAAAGAGGAGGGGAGAGGCGAGTCATCCTCGATTTCCTCGTTCATATGCGAAATCTGCATTGACACTAAAATCGAAACAGAAAATTTCTCTATGACTGGTTGCAGCCACTCATATTGTACAGATTGCGTGGTGAAGTACGTTGGTTCTAAACTTGACGACAACGTGACTAATATCCGGTGTCCGGTACCCCGATGTGGTGGTTTCTTGGAACTCGACGGTTGCCACGAGGTTCTGCCAAAGATGGTTTTTGATCGGTGGGATAAGTTGTTGTGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATGTATTGCCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCGACGGAATCAGAATGCCCTAGCTGTTATAGGCAGATCTGCGTCACGTGA 558 0.4695 MRTIKEFFLRHYYSLWLSPSLSPPSHMNSNDVENHRNSDVATKQRKINKEEGRGESSSISSFICEICIDTKIETENFSMTGCSHSYCTDCVVKYVGSKLDDNVTNIRCPVPRCGGFLELDGCHEVLPKMVFDRWDKLLCEAAVVENESERFMYCPFKDCSALMIVDDDSPTESECPSCYRQICVT 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00229 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 145 IPR013083 -
Aip08g00229 185 MobiDBLite consensus disorder prediction 22 54 - -
Aip08g00229 185 Pfam IBR domain, a half RING-finger domain 133 184 IPR002867 -
Aip08g00229 185 MobiDBLite consensus disorder prediction 32 53 - -
Aip08g00229 185 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Aip08g00229 185 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 46 185 - -
Aip08g00229 185 ProSiteProfiles TRIAD supradomain profile. 60 185 IPR044066 -
Aip08g00229 185 SUPERFAMILY RING/U-box 61 141 - -
Aip08g00229 185 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Aip08g00229 185 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 185 IPR031127 GO:0004842|GO:0016567
Aip08g00229 185 Pfam Zinc finger, C3HC4 type (RING finger) 64 109 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00229 Aip-Chr8 1646309 1646866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00229 64 180 C3H Transcription Factor Family AT2G31760 25.210 1.80e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00229 K11975 - aip:107607785 178.718