Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00220 ATGACCACCGTACCGGGACAGCTGGTTTGGGAGATCGTGAAGAAGAACAACTGTTTCTTGGTTAAGGAGTTTGGAAGGGGCACTCAGAGCGTTGAGTTCAGCAGAGAAGCCAACAATCTCTACAATCTCAACTCCTTCAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCAGCTGGAAAAGATCAGGCTGTGTTGCTTGCTACAACAAAGACAAAGAAGCAAAACAAGCCGGCTGCATTGCTTCATAAATCTATCATGAAGAAGGAGTTTCCTAGAATGGCAAAAGCAGTGAAAAAACAGGTTGCAGCTAACTACTACAGGCCTGATCTCACCAAGGCAGCTCTTGCAAGGTTGAGTGCTGTGAATAGGAGCCTCAGGGTTGCAAAGTCTGGTGTCAAGAAGAGAAACAGACAGGCTGTTAAGGTCCATGGCAGGAAGTGA 453 0.4592 MTTVPGQLVWEIVKKNNCFLVKEFGRGTQSVEFSREANNLYNLNSFKYSGLANKKTVTIQPAGKDQAVLLATTKTKKQNKPAALLHKSIMKKEFPRMAKAVKKQVAANYYRPDLTKAALARLSAVNRSLRVAKSGVKKRNRQAVKVHGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00220 150 Gene3D - 6 133 - -
Aip08g00220 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Aip08g00220 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Aip08g00220 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00220 Aip-Chr8 1565007 1566530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00220 1 143 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 74.825 5.96e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00220 K02903 - gmx:100499921 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00551 09 6056965 6059912 Aip08g00220 08 1565007 1566530 ECH
Aip08g00220 08 1565007 1566530 Aip08g00220 08 1565007 1566530 ECH
Aip08g00220 08 1565007 1566530 Aip09g00551 09 6056965 6059912 PCT