Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00215 ATGGATGGTCTGAGTTGGGATCTTTCTTCACAACTTGCTGCTAATAACCTAGCAATGTTGGAAGGAGAAGAAGACTACTCCATCTTTGTTAATAATCACATGCAAGAGATGCACAAGTCTCATCATCGTCATGGATATCCAAATTCTGAAAAAGTGATGATGATGATGATGAGCAACATGGTTCAGTACCCATCATCAGCAACACCAGAAGCTGAGATTGTGAGTTTTCCACAGAGAACAAGAAACAACAACAACAATTTTAGCATGGCGGTGAAATCATCATCATCATCATCAACCGGTTGGGATGTAAAAGAAGCCTTAACATCTAATCACCAATCATGGCCATCACTTTCAGTAGTCAATTATGTGCCAGATTTCAACATGGCCCACCACCACCAACAACAACAACAACAACAACTCATCAACAGCACAACACAATCATCATCATCCCTTGAATCACTCGATTGCTTGCTTTCAGCTACCAACAGCAACACAGACACTACTACTGCTACTACTTCTCTTGAAGAAGATGATGGCATCTCCATCATTCTATCTGACTGCAGAAACTTCTGGAACTTCACTACTAATTATGGAGCCATCACTGCTGCTGCTGCTGCTGCTTCCTCTGCTGAATCTGAAACCAATAATGCTTCCAACAAACAGAACAACATGCAATATCATCACCATCATCAGATCAATAATAACGAGCTCGATGAAACAGTATCTCAAGCTTCAAAGAGGACAATCATCAATGACCAATATGACCTTATCAAAACTTCTTCTGCTGCTGCTGCAACCACCACCACTGGTCCCTACTTCAGTATCTTCCACAATTCTTCTTCTTCCGCCACTGAAAGCGGCGCCTTCAAGCTTATCAAAGAGAATCCTCTACCAAGATCCAAGAAACCAAGATGGGAGAATAACAACAACAACAACAACAACAACAAGCGTGGTGGTTCATCATCCAACATCAACTTCCAGCAGCCGAATTCATCGCATTCCAGCATTGACGAACCAGATCCAGAGGCCATAGCACAGATGAAGGAGATGATATATAGAGCTGCGGCATTTCGGCCTGTGAACTTGGGATTGGAGGTTGCGGAGAAGCCGAAGAGGAAGAACGTGAAGATATCAAGCGATCCTCAAACGGTAGCTGCAAGGCAAAGAAGGGAGAAAATAAGTGAAAGAATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAAGCAAGATGGACACAGCTTCAATGCTTGATGAAGCTGCAAACTATCTCAAGTTTCTTAGGTCACAGGTCAAAGCTCTTGAAAGCTTAGGGAACAAGCTTGACACCATGAATAATCATAATAATGTTCCTCCTACCACCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATCATGCCATCCTATTTTCCCAACCCTAAACCCTAG 1425 0.4267 MDGLSWDLSSQLAANNLAMLEGEEDYSIFVNNHMQEMHKSHHRHGYPNSEKVMMMMMSNMVQYPSSATPEAEIVSFPQRTRNNNNNFSMAVKSSSSSSTGWDVKEALTSNHQSWPSLSVVNYVPDFNMAHHHQQQQQQQLINSTTQSSSSLESLDCLLSATNSNTDTTTATTSLEEDDGISIILSDCRNFWNFTTNYGAITAAAAAASSAESETNNASNKQNNMQYHHHHQINNNELDETVSQASKRTIINDQYDLIKTSSAAAATTTTGPYFSIFHNSSSSATESGAFKLIKENPLPRSKKPRWENNNNNNNNNKRGGSSSNINFQQPNSSHSSIDEPDPEAIAQMKEMIYRAAAFRPVNLGLEVAEKPKRKNVKISSDPQTVAARQRREKISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKLDTMNNHNNVPPTTIAFSFNPSFPIMPSYFPNPKP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00215 474 MobiDBLite consensus disorder prediction 302 337 - -
Aip08g00215 474 CDD bHLH_AtIND_like 378 436 - -
Aip08g00215 474 SMART finulus 383 432 IPR011598 GO:0046983
Aip08g00215 474 MobiDBLite consensus disorder prediction 295 339 - -
Aip08g00215 474 Gene3D - 382 449 IPR036638 GO:0046983
Aip08g00215 474 PANTHER TRANSCRIPTION FACTOR BHLH87 87 471 - -
Aip08g00215 474 Pfam Helix-loop-helix DNA-binding domain 387 426 IPR011598 GO:0046983
Aip08g00215 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 383 444 IPR036638 GO:0046983
Aip08g00215 474 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 87 471 IPR045843 GO:0003700|GO:0006355
Aip08g00215 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 426 IPR011598 GO:0046983
Aip08g00215 474 Coils Coil 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00215 Aip-Chr8 1537789 1539467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00215 135 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.399 2.49e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00215 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00215 - - aip:107612801 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00215 08 1537789 1539467 Aip08g00215 08 1537789 1539467 ECH
Aip08g00215 08 1537789 1539467 Aip09g00530 09 5751334 5753789 PCT