Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00209 ATGAAGACGATCAAAGAGTTTTTCTTGAGGCACTACTATTCTCTTTGGTTGTCACCATCACTATCACCACCGTCACACATGGATCTCAACTACTTAGTATTCAATTCGGGATCAAGCAAGAGGAGGCAGAGCCAAATGATGAATTCTAACGCCGTAAAGAATCACGGAAACAGCGACGTTGCCACAAAACGAAGGAAGATCAACGAAGAGGAGGGGAGAGGCGAGTCATCCTCGATTTTCTCGTTCGTGTGCGAAATCTGCATTGACATTAAAACCGAAGCGGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTATGGATTACGTGGTGAAGTACGTTGGTTCTAGACTTGACGACAACGTGATTAATATCCGGTGTCCGGTGCCCTGGTGTGGTGGTTTCTTGGAACCCGAGGGTTGCCGCGAGGTTCTGCCAAGGATGGTTTTGGATCGGTGGGAGAAGTCATTATGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATGTATTGCCCCTTCAAGGACTGCTCTGCCCTTATGATCGTGGATGATGATTCACTGACGGAATCAAAATGCCCTAGCTGTAATAGGCAGATCTGCGTCACGTGTGAGGCAGTTTGGCATCATGGGATGATGTGCGAGGAATTTGGGAGGACAGAGAATGAAGATAGAGTGGTGATGGAGGTAGCGGCCAGGAACCGGTGGAAGAGGTGCCCAAACTGCAGGTTCTTTGTTGAGAAAAAACATTTCACGTGCGGTAAAATCCGTTGCAAGTGTGGATATTCGTTCTGTTACCACTGTGGAAAGAGTTGGGATTCCTGTTACCGCTCTATCTTCTGGGCTTTGGCGGATGGTACCGTGAACGTATTTAAAGTGACTCCGCCTAAACCAAAGAAAAAAAAAGTGACTTCGCATAAAAGGGAGTAG 936 0.469 MKTIKEFFLRHYYSLWLSPSLSPPSHMDLNYLVFNSGSSKRRQSQMMNSNAVKNHGNSDVATKRRKINEEEGRGESSSIFSFVCEICIDIKTEAENFSITGCSHSYCMDYVVKYVGSRLDDNVINIRCPVPWCGGFLEPEGCREVLPRMVLDRWEKSLCEAAVVENESERFMYCPFKDCSALMIVDDDSLTESKCPSCNRQICVTCEAVWHHGMMCEEFGRTENEDRVVMEVAARNRWKRCPNCRFFVEKKHFTCGKIRCKCGYSFCYHCGKSWDSCYRSIFWALADGTVNVFKVTPPKPKKKKVTSHKRE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00209 311 ProSiteProfiles TRIAD supradomain profile. 80 288 IPR044066 -
Aip08g00209 311 Pfam IBR domain, a half RING-finger domain 233 275 IPR002867 -
Aip08g00209 311 Pfam IBR domain, a half RING-finger domain 154 216 IPR002867 -
Aip08g00209 311 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 44 275 - -
Aip08g00209 311 MobiDBLite consensus disorder prediction 44 72 - -
Aip08g00209 311 SUPERFAMILY RING/U-box 166 219 - -
Aip08g00209 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 164 IPR013083 -
Aip08g00209 311 SUPERFAMILY RING/U-box 227 277 - -
Aip08g00209 311 Gene3D - 214 310 - -
Aip08g00209 311 SMART ibrneu5 217 277 IPR002867 -
Aip08g00209 311 SMART ibrneu5 152 216 IPR002867 -
Aip08g00209 311 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 275 IPR031127 GO:0004842|GO:0016567
Aip08g00209 311 SUPERFAMILY RING/U-box 82 161 - -
Aip08g00209 311 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00209 Aip-Chr8 1469030 1469965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00209 84 271 C3H Transcription Factor Family AT2G19610 26.923 3.61e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00209 K11975 - cit:102612755 233.417