Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00199 ATGTATATAACTGCTCCAGGTCCAGTAGTGGGTTGGCCTCCAATCCGTTCATTCAGGAAGAACCTTGCAAATAGCAGCAGCTCTTCAAAGCCACCTCCTCCTCCTCCTGAGCACCATAACAAGGACTATGGTGGTGGTGGTGGAAAAGGCATGTTTGTCAAGATCAACATGGATGGTGTTCCCATTGGTAGAAAAGTTGACCTCAATGCTTACGATAGCTATGAAAATCTCTCCAATGCTGTGGACCAACTCTTCAGAGGCCTTCTTGCTGCTCAAAGAGATTCCTCTGGTGGTGGAGTTAACAAGCTACAAGAGGAAGAGAAAGTGATAACAGGTTTATTAGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGAGTCTTGAAGAGTTCTGAGCTTTCTGCCTTTACCCTTGGTGGTAAGCAAGAGAAAGATGCAACTTGA 516 0.4554 MYITAPGPVVGWPPIRSFRKNLANSSSSSKPPPPPPEHHNKDYGGGGGKGMFVKINMDGVPIGRKVDLNAYDSYENLSNAVDQLFRGLLAAQRDSSGGGVNKLQEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGGKQEKDAT 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00199 171 SUPERFAMILY CAD & PB1 domains 47 151 - -
Aip08g00199 171 Pfam AUX/IAA family 6 159 IPR033389 -
Aip08g00199 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 4 167 - -
Aip08g00199 171 MobiDBLite consensus disorder prediction 21 46 - -
Aip08g00199 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 167 IPR003311 GO:0005634|GO:0006355
Aip08g00199 171 ProSiteProfiles PB1 domain profile. 50 154 IPR000270 GO:0005515
Aip08g00199 171 Gene3D - 46 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00199 Aip-Chr8 1377131 1378514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00199 53 165 B3 DNA Binding Superfamily AT4G23980 33.628 4.24e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip08g00199 AUX_IAA 2.2e-64 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00467 09 4928116 4934432 Aip08g00199 08 1377131 1378514 ECH
Aip08g00199 08 1377131 1378514 Aip08g00199 08 1377131 1378514 ECH
Aip08g00199 08 1377131 1378514 Aip09g00467 09 4928116 4934432 PCT