Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00196 ATGGATGCTCTATTGCCTAAGACCAATCACTGGGCAAGAACTGCTTCTGTTATATCACTGAGGTTGTTCTGTGGCTGCTCAAGTGGACTCTGGAACTATCTGGTGAGTTATGTAATCAGAGATGGGGATAGCATTGAAGCAGTGAATGCCATTGACAATCCTGATAATGTCATTGTTGGTTGTCTGTTTTATATACCTCTCAATTCAACTGATCAAGTCAATCATAATGACAATGTGGCCTCTGGATGGATCATTGGGGGCTTAATGGAAGTTGCTATCAAAAGGATGACAACTGCACACACTAAAGAATCTATGATAGAATTGAAAGCTATGTGCAGGGTTCATCATGCTATCCTGGTAGAATTTATCGGTTATGCAGCCAGTCATGATAACGAGATTTTCTTGATTCTCAATATGCTCAAATGGGTTTACTCAGAAGCCATTTATAAGGGTCATTTGCCGCTTTCTTGGATCATCAGGGTTCAGATTGCGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATGCAAAAGCTCATGATGTCCATCAAGATATCACCACAAGCAACATTTTACTTGCTGCTTCCTTTAGAGGCAAGATATCAGATTTTGGGTTCGCAAAACTTATAGCTAAAGGAAATGTTGGAGAAGCTGCAACAAGAAAATTTGCTACTTCATATGGATATCTTGCTCCAGAATTCTTGGGAGATGGCCTTGCAATGACTGAGAGTGATGTCTTCGCATTTGGAGTTGTTCTTTTTGAGATCATATCAGGGAAGGAGGCCGTTATTCAAACTGAAGGTGTGGCGACAAATAATCCTGACAGACGTTCCATTGGCATCTGTTCTTTAGTTTTTAGAACTTCATTAGCAGTTGTCTCAATGCAGATGGTTTCCATTCTTAGGAGCACTTCAAGCCTGAGAGACAACATTGGTCCTAGCATGATGAATCTGTATCCTTATGATAATGTATTTAAGGTTCTTCATCTCAATATGATCCAAAAAACTGTAATTTCTCAAAATTTCACCCCACAAGTTTGTTGTTTGCATAGATGGCCATGCTTGCAAAACAATGTGTGGAGGATGACCCCATCTTACAACTCTAGCAGGGAAGAGCCAAGTTTTCAGTGGCCTAATTCTGGGGAGATAATTAACAAAGCAAGAATTTCTTTTTTCTCATATCCATTGGATCAGCAACTTGTCATGGAGTTGGTGGTTCAACACCTTTGTCCATTGCCCTGA 1245 0.4048 MDALLPKTNHWARTASVISLRLFCGCSSGLWNYLVSYVIRDGDSIEAVNAIDNPDNVIVGCLFYIPLNSTDQVNHNDNVASGWIIGGLMEVAIKRMTTAHTKESMIELKAMCRVHHAILVEFIGYAASHDNEIFLILNMLKWVYSEAIYKGHLPLSWIIRVQIALDAARGLEYIHEHAKAHDVHQDITTSNILLAASFRGKISDFGFAKLIAKGNVGEAATRKFATSYGYLAPEFLGDGLAMTESDVFAFGVVLFEIISGKEAVIQTEGVATNNPDRRSIGICSLVFRTSLAVVSMQMVSILRSTSSLRDNIGPSMMNLYPYDNVFKVLHLNMIQKTVISQNFTPQVCCLHRWPCLQNNVWRMTPSYNSSREEPSFQWPNSGEIINKARISFFSYPLDQQLVMELVVQHLCPLP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00196 414 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 7 89 - -
Aip08g00196 414 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 89 331 - -
Aip08g00196 414 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 89 IPR044812 GO:0019199|GO:0045087
Aip08g00196 414 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 89 331 IPR044812 GO:0019199|GO:0045087
Aip08g00196 414 Gene3D Transferase(Phosphotransferase) domain 1 78 306 - -
Aip08g00196 414 Pfam Protein tyrosine and serine/threonine kinase 89 263 IPR001245 GO:0004672|GO:0006468
Aip08g00196 414 SUPERFAMILY Protein kinase-like (PK-like) 89 267 IPR011009 -
Aip08g00196 414 ProSiteProfiles Protein kinase domain profile. 33 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00196 Aip-Chr8 1342661 1345358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00196 3 69 Receptor kinase-like Gene Family AT1G51940 49.383 2.95e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip08g00196 PK_Tyr_Ser-Thr 6.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00196 - - aip:107610298 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00196 08 1342661 1345358 Aip09g00465 09 4901959 4907166 PCT