Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00192 ATGACTCGGCGGTGCTCACACTGTAGCAACAACGGCCACAATTCCAGGACATGCCCCAACCGCGGCGGCGGCGGCGGAGGCGGCGGAGGAGTGAAGCTGTTCGGTGTGAGGCTGACGGATGGATCAATCATAAAGAAGAGTGCGAGTATGGGGAATCTCATGACGCTTCACCACCATTGTTCGTCTCCTTCTTCCTCCTTTGTGGCCGCCGCCGGCGATAACCCAGGCTCGCCTGACCCTGTCGGTTACTTGTCCGACGACCCTGCCCACGCCTCGTCCTTCGCCAACCGCCGTGGCGAAAGAAAGAAAGGTGTTCCATGGACCGAAGAAGAACATCGGATGTTCTTAGTTGGTCTGCAAAAGCTGGGGAAAGGAGATTGGCGTGGAATATCACGTAATTTTGTTGTATCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAGAGTAATGCTACCCGGAGAAAGAGGCGTTCCAGCCTCTTTGACATGGCTCCGGATATGCCTACGGATCCGCCTTCGGTGCTGGAAAAACAAGTACTGCTTCTGACCTCTGAGAACTCACAATCTCCCAATGTAAAATCACAACCTTCATTAAATCTATCTCTCAAATCTGAAGTTGACCCCATGGAAATTGCTTCTGAAGAAAATGTGAAAGAGAACAATGTAGCTAATGGGTTGAAACCAAAGGCTGCTGAATACTTCCCAACTTATGTACCTGTCCGATTTTCCATATGGCCATCACTGGAAGCTTCCTTTCAAGAAAGTAATGGAGTAGAGACATCTCATCATGAGGTTGTAAAGCCAATTCCAGTCGTTCCCAAGAATCCGGTCAATGTTGATGCACTTGTGGGAATGTCTAATCTGAGCATTGGAAACACACAGATGATTCTTGAAAGGGAGCCTTCCCCACTTTCCCTGAAATTGTTAGGAGAGCCATCGAGGCAGTCGACATTCCATGCGAATACTCATGCGCCTGTTGGCCGGACGGACCTAAGCAGTGGCAAGAACAATCCAATCCAAGCTGTTTGA 1047 0.4967 MTRRCSHCSNNGHNSRTCPNRGGGGGGGGGVKLFGVRLTDGSIIKKSASMGNLMTLHHHCSSPSSSFVAAAGDNPGSPDPVGYLSDDPAHASSFANRRGERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMPTDPPSVLEKQVLLLTSENSQSPNVKSQPSLNLSLKSEVDPMEIASEENVKENNVANGLKPKAAEYFPTYVPVRFSIWPSLEASFQESNGVETSHHEVVKPIPVVPKNPVNVDALVGMSNLSIGNTQMILEREPSPLSLKLLGEPSRQSTFHANTHAPVGRTDLSSGKNNPIQAV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00192 348 PANTHER OS01G0187900 PROTEIN 1 342 - -
Aip08g00192 348 SMART sant 103 153 IPR001005 -
Aip08g00192 348 Gene3D - 107 156 - -
Aip08g00192 348 MobiDBLite consensus disorder prediction 1 25 - -
Aip08g00192 348 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Aip08g00192 348 PANTHER TRANSCRIPTION FACTOR KUA1 1 342 - -
Aip08g00192 348 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 154 IPR006447 GO:0003677
Aip08g00192 348 MobiDBLite consensus disorder prediction 1 18 - -
Aip08g00192 348 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Aip08g00192 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 155 IPR017930 -
Aip08g00192 348 CDD SANT 106 151 IPR001005 -
Aip08g00192 348 MobiDBLite consensus disorder prediction 323 348 - -
Aip08g00192 348 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Aip08g00192 348 SUPERFAMILY Homeodomain-like 101 156 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00192 Aip-Chr8 1322269 1325063 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip08g00192 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00192 - - gmx:778036 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00192 08 1322269 1325063 Aip08g00192 08 1322269 1325063 ECH