Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00178 ATGGCTGAAGCTTCTACCACTTCCTCCACAACACGCTCCCCTAAAAAACAGAGCAAGCCCAAGAAACCCAGAGACTGCAGCAAGCACCCCGTCTACCACGGTGTACGGATGCGAAATTGGGGCAAATGGGTCTCCGAAATTCGCGAGCCTCGCAAAAAATCTCGAATCTGGCTCGGCACCTTCGCTACGCCGGAAATGGCCGCGCGTGCGCACGACGTCGCCGCCTTGTGCATTAAGGGCAAAGCAGCCATTCTTAACTTCCCAAAGATTGCTAAACTGCTTCCTAGACCAGTCACGCCGACTCCACGTGACATCCAGGCCGCGGCAGCAGAGGCTGCGGCCATGGTAGACTTCGACTCTGTTTCCTCTGACTCGGAAGAAGGAACAGAGGAAACAGAGTCGTCAGAGCTGAGCGAGATTGTAGAGCTGCCAAATATAGAAGAAAAGAGCTTCGACTCGGTTGACTCGGGGACTGAGTTCATGCTTCTTGACTCGGTGGACAGTTGGGTGTTCCCGCCAATGGCGGCTTCAACTTTGTCGGAAATGATGATGATGTTTGAAGCAGAAGACCTCTCTGCCTCTGAGTGTGTGGTTCCAATTTGGGGTTCTGTTTAG 615 0.5333 MAEASTTSSTTRSPKKQSKPKKPRDCSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALCIKGKAAILNFPKIAKLLPRPVTPTPRDIQAAAAEAAAMVDFDSVSSDSEEGTEETESSELSEIVELPNIEEKSFDSVDSGTEFMLLDSVDSWVFPPMAASTLSEMMMMFEAEDLSASECVVPIWGSV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00178 204 MobiDBLite consensus disorder prediction 123 137 - -
Aip08g00178 204 MobiDBLite consensus disorder prediction 1 30 - -
Aip08g00178 204 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Aip08g00178 204 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Aip08g00178 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 187 - -
Aip08g00178 204 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Aip08g00178 204 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Aip08g00178 204 MobiDBLite consensus disorder prediction 118 138 - -
Aip08g00178 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 187 - -
Aip08g00178 204 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
Aip08g00178 204 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Aip08g00178 204 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Aip08g00178 204 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00178 Aip-Chr8 1162318 1163211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00178 2 173 AP2-EREBP Transcription Factor Family AT5G11590 54.211 3.56e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip08g00178 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00178 K09286 - gmx:100801780 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00178 08 1162318 1163211 Aip08g00178 08 1162318 1163211 ECH