Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00167 ATGTCTACACCTTTGGAACATGATTACATAGGCTTAGCAGAGAAGAAGAAGATACCTTCATCATCATCTTCTTCTTCTTCTTCTGAAGATGGAAAGACCTTCAAGGAGACTGAGTTAAGGCTTGGCCTACCAGGTTCTGAGTCTCCAGAGAGAAAACCACTTTCTGGGGTGTCTCTCTCTCTATTTGGGAAGCTCAATAACAACAACAATGTGATGAACCACCATGTCCATGTGGCTGGTGCTAAGAGAGGCTTTTCTGATGCCATTGATGCTAAATGGGGTTTCTCTGATGCTCATGGATCTGACTCTGACTTGGGAAAAGCTTCTGCTTTGTTTTCACCAAGAGGAGCAGGGAATGTTGTTGGAAAGCCTCCATTGGACCCCAAAACCATTAGCACCCAGCAAGGAAATACCATTAACACCCCTGCTTCTGCTTCACAAGCCATCAAAGAGTCCAAGCCTCTTCAGGAAAAGAACCCTCAACTTCCTGCTACTAATGAACATGCTAGTGCTCCTGCTTCTAAGGCACAGGTTGTGGGGTGGCCACCAATTCGATCGTTTCGAAAGAACACCATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAAGGGAAACCAGGATTTGGTTGTTTGTATGTGAAGGTAAGCATGGATGGTGCTCCTTATCTAAGAAAGGTTGATCTCAAAACCTATAGCAACTATAAGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTCACCATTGGTCAGTGCAACTCTCCTGGGCTGCCTGGAAAAGATGGATTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATATGTTCTTACTTATGAAGACAAGGATGGAGATTGGATGCTTGTGGGAGATGTTCCTTGGGAGATGTTCACTGACTCGTGCAGGAGACTGAGGATCATGAAAGGGTCTGAGGCAATTGGACTAGCTCCAAGAGCAGTGGAAAAATCAAAGAGCCAAAACTAG 996 0.4488 MSTPLEHDYIGLAEKKKIPSSSSSSSSSEDGKTFKETELRLGLPGSESPERKPLSGVSLSLFGKLNNNNNVMNHHVHVAGAKRGFSDAIDAKWGFSDAHGSDSDLGKASALFSPRGAGNVVGKPPLDPKTISTQQGNTINTPASASQAIKESKPLQEKNPQLPATNEHASAPASKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYSNYKELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAVEKSKSQN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00167 331 MobiDBLite consensus disorder prediction 128 172 - -
Aip08g00167 331 MobiDBLite consensus disorder prediction 116 176 - -
Aip08g00167 331 SUPERFAMILY CAD & PB1 domains 211 312 - -
Aip08g00167 331 MobiDBLite consensus disorder prediction 1 53 - -
Aip08g00167 331 Gene3D - 208 325 - -
Aip08g00167 331 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 323 IPR003311 GO:0005634|GO:0006355
Aip08g00167 331 ProSiteProfiles PB1 domain profile. 211 313 IPR000270 GO:0005515
Aip08g00167 331 Pfam AUX/IAA family 36 322 IPR033389 -
Aip08g00167 331 PANTHER AUXIN-RESPONSIVE PROTEIN 5 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00167 Aip-Chr8 1067160 1069527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00167 213 316 B3 DNA Binding Superfamily AT1G19850 33.962 2.26e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip08g00167 AUX_IAA 1e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00167 K14484 - gmx:100806699 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00167 08 1067160 1069527 Aip08g00167 08 1067160 1069527 ECH